| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,272,366 – 15,272,467 |
| Length | 101 |
| Max. P | 0.612216 |
| Location | 15,272,366 – 15,272,467 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 71.84 |
| Shannon entropy | 0.52603 |
| G+C content | 0.46985 |
| Mean single sequence MFE | -27.70 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.47 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15272366 101 + 24543557 -----UAUCGGAUGUUUUUCUCAUUUGGCCGGGUCAUAUUAUCCAACUGGGAUAAGG-AAGGACCACGAACAAAGACAACA--AACGGGGCACGUGCAUGCCGAAAAAC -----........(((((((((.((((..((((((...((((((.....))))))..-...)))).))..)))))).....--.....((((......))))))))))) ( -28.60, z-score = -2.26, R) >droPer1.super_12 1254908 98 - 2414086 --------CAAAUGCCAUUCACAAUUUUUUCUCAUUUCCUUUCCCCGUUAUAU-AUCCAAAGGGGGGAAUAAACAGCAGCA--AACGAGGCACGUGCAUGCAAGAGAGC --------....................(((((......(((((((.((....-.....)).)))))))......(((((.--.(((.....))))).)))..))))). ( -20.70, z-score = -0.67, R) >dp4.chrXR_group6 12835140 99 - 13314419 --------CAAAUGCCAUUCACAAUUUUUUCUCAUUUCCUUUCCCCGUUAUAUUAUCCAAAGGGGGGAAUAAACAGCAGCA--AACGAGGCACGUGCAUGCAAGAGAGC --------....................(((((......(((((((.((..........)).)))))))......(((((.--.(((.....))))).)))..))))). ( -20.60, z-score = -0.64, R) >droAna3.scaffold_13337 5570428 108 - 23293914 UAUGGCAUCGAAUUUUUUUCUCAUUUGCCCGU-UUAUAUUAUCCUGGGGGGAUAAGGCAAGAGCCCGAAACAAAGAAAACAGAAACCAGGCACGUGCAUGGCAAAAAGC ..((.(((.(((.....))).(((.((((.((-((...((((((.....))))))(((....))).................))))..)))).))).))).))...... ( -21.90, z-score = 0.77, R) >droEre2.scaffold_4784 17532864 99 + 25762168 -----CAACGGAUGUUUUUCUCAUUUGGCCGGGUCAUAUUGUCCAACUGGGAUAAGG-AAA--CCCGGCACAAAGACAACA--AACGGGGCACGUGCAAGCCGAAAAGC -----........(((((((((.(((((((((((....((((((.....))))))..-..)--)))))).)))))).....--.....(((........)))))))))) ( -33.70, z-score = -2.87, R) >droYak2.chr3L 17783941 100 + 24197627 -----CAUCGGAUGUUUUUCUCAUUUGGCCGGGUCACAUUAUCCAACUGGGAUAAGG-AAAA-CCCGGAACAAAGACAACA--AACGGGGCACGUGCAUGCCGAAAAGC -----..((((((((...((((.((((.((((((....((((((.....))))))..-...)-)))))...........))--)).)))).....)))).))))..... ( -29.50, z-score = -1.83, R) >droSec1.super_0 7384406 101 + 21120651 -----CAUCGGAUGUUUUUCUCAUUUGGCCGGGUCAUAUUAUCCAACUGGGAUAAGG-AAGGACCCGGAACAAAGACAACA--AACGGGGCACGUGCAUGCCGAAAAGC -----..((((((((...((((.((((.(((((((...((((((.....))))))..-...)))))))...........))--)).)))).....)))).))))..... ( -33.30, z-score = -2.78, R) >droSim1.chr3L 14612671 101 + 22553184 -----CAUCGGAUGUUUUUCUCAUUUGGCCGGGUCAUAUUAUCCAACUGGGAUAAGG-AAGGACCCGGAACAAAGACAACA--AACGGGGCACGUGCAUGCCGAAAAGC -----..((((((((...((((.((((.(((((((...((((((.....))))))..-...)))))))...........))--)).)))).....)))).))))..... ( -33.30, z-score = -2.78, R) >consensus _____CAUCGGAUGUUUUUCUCAUUUGGCCGGGUCAUAUUAUCCAACUGGGAUAAGG_AAAGACCCGGAACAAAGACAACA__AACGGGGCACGUGCAUGCCGAAAAGC .......................((((((((((.....((((((.....))))))........))))......................((....))..)))))).... (-11.53 = -11.47 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:22 2011