| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,266,860 – 15,266,955 |
| Length | 95 |
| Max. P | 0.875368 |
| Location | 15,266,860 – 15,266,955 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.11 |
| Shannon entropy | 0.22603 |
| G+C content | 0.41873 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -16.67 |
| Energy contribution | -16.56 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15266860 95 + 24543557 UCCAUCAACCCAAUUGUAGUGACGUGUGUG---------CAUAUACGCAAAAAAA-AAAAAAAUUUAGAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGG ........(((............((((((.---------...)))))).......-.........................(((((.........)))))..))) ( -13.10, z-score = 0.14, R) >droSim1.chr3L 14607182 101 + 22553184 UCCAUCAACCCAAUUGUAGUGACGUGUGUGCGAAGAACGCAUAUACGCAAAAAAA----AAAAUUGGGAAAAGAACCCGCACGAUUGACCUACAAAAUCGGAGGG ........(((((((....((.((((((((((.....))))))))))))......----..))))))).......(((...(((((.........)))))..))) ( -32.60, z-score = -4.71, R) >droSec1.super_0 7378842 98 + 21120651 UCCAUCAACCCAAUUGUAGUGACGUGUGUGCGAAGAACGCAUAUACGCAAAAAAA----A---UUGGAAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGG .((.((...((((((....((.((((((((((.....)))))))))))).....)----)---))))..............(((((.........))))))))). ( -28.20, z-score = -3.83, R) >droYak2.chr3L 17778363 97 + 24197627 UCCAUCAACCCAAUUGUAGUGACGUGUGUGCAAAGAACGCAUAUAUCCUAAAAAA----A---UUGGGAAAA-AACCAGCACGAUUGACCUACAAAAUCGGAGGG .((.((..(((((((.(((.((..((((((.......))))))..)))))....)----)---)))))....-........(((((.........))))))))). ( -25.60, z-score = -2.93, R) >droEre2.scaffold_4784 17527208 105 + 25762168 UCCAUCAACCCAAUGGUAGUGACGUGUGUGCAGAGAACGCAUAUACCCGAAAAAAUGAAAAAAUAGGGAAAAGAAGCAGCACGAUUGACCUACAAAAUCGGAGGG ........(((..((((..((..((((((((.......)))))))).................((((..((.(........)..))..))))))..))))..))) ( -19.90, z-score = -0.49, R) >consensus UCCAUCAACCCAAUUGUAGUGACGUGUGUGCAAAGAACGCAUAUACGCAAAAAAA____AAAAUUGGGAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGG ........(((............((((((((.......))))))))...................................(((((.........)))))..))) (-16.67 = -16.56 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:18 2011