| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,255,139 – 15,255,229 |
| Length | 90 |
| Max. P | 0.870028 |
| Location | 15,255,139 – 15,255,229 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 87.86 |
| Shannon entropy | 0.22811 |
| G+C content | 0.51685 |
| Mean single sequence MFE | -31.67 |
| Consensus MFE | -20.93 |
| Energy contribution | -21.15 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15255139 90 - 24543557 UUACAAACAUCGGGGAUAAACA-CGAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC-AGAACCUGCGGUUGACCCGGCCCA .(((((...(((.(......).-)))..))))).(((((.((((...((((((((......))))))-))((((...))))))))))))).. ( -34.80, z-score = -3.03, R) >droSim1.chr3L 14595492 90 - 22553184 UUACAAACAUCGGGGAUAAACA-CGAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC-AGAACCUGCGGUUGACCCGGCCCA .(((((...(((.(......).-)))..))))).(((((.((((...((((((((......))))))-))((((...))))))))))))).. ( -34.80, z-score = -3.03, R) >droSec1.super_0 7367154 90 - 21120651 UUACAAACAUCGGGGAUAAACA-CCAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC-AGAACCUGCGGUUGACCCGGCCCA ......(((...((........-))....)))(.(((((.((((...((((((((......))))))-))((((...)))))))))))))). ( -34.10, z-score = -2.77, R) >droYak2.chr3L 17766258 90 - 24197627 UUAUAAACAUCGGGGAUAAACA-CGAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC-AGAACCUGCGGUUGACCCAAGCCG ...........(((......((-((....))))((..(((((.....((((((((......))))))-))...)))))..)).)))...... ( -30.40, z-score = -2.50, R) >droEre2.scaffold_4784 17515822 89 - 25762168 UUAUAGACGUC-GGGAUAAACA-CGAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC-AGAACCUGCGGUUGACCCAGCCCG ........((.-(((.....((-((....))))((..(((((.....((((((((......))))))-))...)))))..)).))).))... ( -30.70, z-score = -2.11, R) >droAna3.scaffold_13337 5554998 79 + 23293914 -------------UUAUAAACGUCGAGAUUGUGUGGUCGCGGUCAACGUGGCCAUAUAUCAAUGGCCAAGAACCUGCGGUUGACCCAAGCCA -------------........((((....((((((((((((.....))))))))))))....))))...........((((......)))). ( -25.20, z-score = -1.49, R) >consensus UUACAAACAUCGGGGAUAAACA_CGAAAUUGUGCGGUCGCGGUCAAACUGGCCAUAUAUCAAUGGCC_AGAACCUGCGGUUGACCCAGCCCA ............(((....(((.......))).((..(((((.......((((((......))))))......)))))..)).)))...... (-20.93 = -21.15 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:16 2011