| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,248,486 – 15,248,579 |
| Length | 93 |
| Max. P | 0.615329 |
| Location | 15,248,486 – 15,248,579 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 66.52 |
| Shannon entropy | 0.63324 |
| G+C content | 0.36824 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -7.04 |
| Energy contribution | -8.68 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15248486 93 - 24543557 GAUUCAUGAUUAUAUGU------------------AUCCAUAUGGAGCUUUACGAAGGUGGAGCGGAUUAAGAUACACGGACUUAAAUACUUCAAUCAGCAUAAGAACGAU (((((....(((((((.------------------...))))))).(((((((....))))))))))))........((..((((................))))..)).. ( -18.89, z-score = -1.58, R) >droEre2.scaffold_4784 17509427 106 - 25762168 GAUUCAUGAUUAUACGUU--UAUGUAUCCAUAUCCAUACAU-UGGAGCUUUUCGAAGGUGGAGCGGAUUAAGAUAUACGGAC-UAAAUUC-CCAAUCAGCACAAGAACGCU ..............((((--(.(((((((...((((.....-))))((((..(....)..))))))))...(((....(((.-.....))-)..)))...))).))))).. ( -23.40, z-score = -1.31, R) >droYak2.chr3L 17759174 102 - 24197627 GAUUCAUGGUUAUACG--------UAUCCAUAUCCAUCCAUAUGGAGC-UUGCGAAGGUGGAGCGGAUUAAGAUAUACGAACUUAAAUUCCCCAAUCAGCAUAAGAACGAU ((.....((((....(--------((((...((((.(((....)))((-(..(....)..).))))))...)))))...)))).....))..................... ( -19.80, z-score = 0.08, R) >droSec1.super_0 7360747 104 - 21120651 GAUUCAUGAUUAUAUGU-------AUCUCAUAUCCAUCCAUAUGGAGCUUUACGAAGGUGGAGCGGAUUAAGAUACACGGACUUAAAUACUCCAAUCAGCAUAAGAACGAU ......(((((...(((-------((((...((((.(((....)))(((((((....)))))))))))..))))))).(((.........))))))))............. ( -30.60, z-score = -3.93, R) >droSim1.chr3L 14588604 111 - 22553184 GAUUCAUGAUUAUAUGUGUAUAUAUAUCCAUAUUCAUCCAUAUGGAGCUUUACGAAGGUGGAGCGGAUUAAGAUACACGGACUUAAAUACUCCAAUCAGCAUAAGAACGAU ......(((((....((((((....((((.......(((....)))(((((((....)))))))))))....))))))(((.........))))))))............. ( -30.80, z-score = -3.57, R) >droGri2.scaffold_15110 4435113 73 + 24565398 ----------------------------GGUAUUCUUACAAGUAUCAGUUU-UGCAAUCGAAACG--UCAAAAUUUA----UUUUGUUGUCUGGGAAAACAUGACGAU--- ----------------------------((((((......)))))).((((-((....)))))).--..........----....((((((((......)).))))))--- ( -12.00, z-score = -0.36, R) >consensus GAUUCAUGAUUAUAUGU_______UAUCCAUAUCCAUCCAUAUGGAGCUUUACGAAGGUGGAGCGGAUUAAGAUACACGGACUUAAAUACUCCAAUCAGCAUAAGAACGAU (((((...............................(((....)))(((((((....)))))))))))).......................................... ( -7.04 = -8.68 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:14 2011