| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,247,707 – 15,247,808 |
| Length | 101 |
| Max. P | 0.885596 |
| Location | 15,247,707 – 15,247,799 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 70.79 |
| Shannon entropy | 0.59013 |
| G+C content | 0.35293 |
| Mean single sequence MFE | -20.70 |
| Consensus MFE | -7.55 |
| Energy contribution | -8.04 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15247707 92 + 24543557 GUUACACGACUGGCGAA-CGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUGUA (((((....(((.....-)))..................(((((((((((-(((...(((((.....))))))))))))))))))))))))... ( -24.90, z-score = -3.12, R) >droSec1.super_0 7359970 92 + 21120651 GUUACACGACUGGCGAA-CGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGUAUUAGUAAUGUA (((((....(((.....-)))..................(((((((((((-(((...(((((.....))))))))))))))))))))))))... ( -22.90, z-score = -2.38, R) >droYak2.chr3L 17758421 93 + 24197627 GUUACACGACUGGAAAU-CGGGACAUUUAUUCAAAUAUUUAAUGCGAUUUUGAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUCAA (((((.(((.(....))-))...................(((((((((((.(((..(((......)))..)))..))))))))))))))))... ( -22.30, z-score = -2.58, R) >droEre2.scaffold_4784 17508698 92 + 25762168 GUUACACGACUGGCCAU-CGGGACAUUUAUUCCAAUACUUAAUGCGAUUU-GAGGUCGGAUUUGGUUGGUCUUUCAAAUCGCAUUAGUAAUCAA (((((............-.((((......))))......(((((((((((-(((...(((((.....))))))))))))))))))))))))... ( -25.00, z-score = -2.43, R) >droAna3.scaffold_13337 5548170 92 - 23293914 GUUACACGAUUCAAGAAACGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGCAGUGAUGGGUCUU-CAAAUCUCAUUAGUACUGAG (((...((.((....)).)).)))......(((.....((((((.(((((-((((.(..((....)).).)))-)))))).))))))...))). ( -20.30, z-score = -1.58, R) >dp4.chrXR_group6 12813735 92 - 13314419 AGGUUACGACACAGAAA-CGGGAUAUUCAUUCAAAAAUUUAAUUCGAUUU-GUGGUUGACUUUGAAUGGCCUUUCAGAUCGGAUCAGAAACCAU .((((............-..((((....)))).....(((.(((((((((-(.((((..........))))...)))))))))).))))))).. ( -18.30, z-score = -0.26, R) >droPer1.super_12 1233291 92 - 2414086 AGGUUACGACACAGAAA-CGGGAUAUUCAUUCAAAAAUUUAAUUCGAUUU-GUGGUUGACUUUGAAUGGCCUUUCAGAUCGGAUCAGAAACCAU .((((............-..((((....)))).....(((.(((((((((-(.((((..........))))...)))))))))).))))))).. ( -18.30, z-score = -0.26, R) >droGri2.scaffold_15110 4434452 88 - 24565398 GGUUCA-GAGAAAGAAGAUAGGUCAUAUGAUUU--UAUUGACUGUGCUUCGGAAUUCAUUUAAAGAAAUCUUUACAAAU---AUAAAUUAUCUU ......-((((..((((...(((((........--...)))))...))))..........(((((....))))).....---........)))) ( -13.60, z-score = -0.06, R) >consensus GUUACACGACUGACAAA_CGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU_GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUCAA .........................................((((((((..((((((((......))))))))...)))))))).......... ( -7.55 = -8.04 + 0.49)
| Location | 15,247,718 – 15,247,808 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 70.00 |
| Shannon entropy | 0.61625 |
| G+C content | 0.35058 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -7.55 |
| Energy contribution | -8.04 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15247718 90 + 24543557 GGCGAACGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUGUACGCUGUAAU- ((((.(((..((((((....))))...(((((((((((-(((...(((((.....)))))))))))))))))))))..))).)))).....- ( -27.20, z-score = -4.04, R) >droSec1.super_0 7359981 90 + 21120651 GGCGAACGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGUAUUAGUAAUGUACGCUGUAAU- ((((.(((..((((((....))))...(((((((((((-(((...(((((.....)))))))))))))))))))))..))).)))).....- ( -25.20, z-score = -3.44, R) >droYak2.chr3L 17758432 91 + 24197627 GGAAAUCGGGACAUUUAUUCAAAUAUUUAAUGCGAUUUUGAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUCAACGGUGUAAU- ....(((((((......)))......((((((((((((.(((..(((......)))..)))..)))))))))))).......)))).....- ( -21.00, z-score = -2.29, R) >droEre2.scaffold_4784 17508709 90 + 25762168 GGCCAUCGGGACAUUUAUUCCAAUACUUAAUGCGAUUU-GAGGUCGGAUUUGGUUGGUCUUUCAAAUCGCAUUAGUAAUCAACGGUGUAAU- ...((((((((.......)))..((((.((((((((((-(((...(((((.....)))))))))))))))))))))).....)))))....- ( -28.60, z-score = -3.72, R) >droAna3.scaffold_13337 5548182 90 - 23293914 AAGAAACGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU-GAGGUCAGCAGUGAUGGGUCUU-CAAAUCUCAUUAGUACUGAGUACUCUAAAA .......(((.....((((((.....((((((.(((((-((((.(..((....)).).)))-)))))).))))))...)))))))))..... ( -21.90, z-score = -2.41, R) >dp4.chrXR_group6 12813746 90 - 13314419 CAGAAACGGGAUAUUCAUUCAAAAAUUUAAUUCGAUUU-GUGGUUGACUUUGAAUGGCCUUUCAGAUCGGAUCAGAAACCAUCGCCUUAGU- .......((((.......)).....(((.(((((((((-(.((((..........))))...)))))))))).)))..))...........- ( -15.60, z-score = 0.79, R) >droPer1.super_12 1233302 90 - 2414086 CAGAAACGGGAUAUUCAUUCAAAAAUUUAAUUCGAUUU-GUGGUUGACUUUGAAUGGCCUUUCAGAUCGGAUCAGAAACCAUCGCCUUAGU- .......((((.......)).....(((.(((((((((-(.((((..........))))...)))))))))).)))..))...........- ( -15.60, z-score = 0.79, R) >droGri2.scaffold_15110 4434463 80 - 24565398 AGAAGAUAGGUCAUAUGAUUU--UAUUGACUGUGCUUCGGAAUUCAUUUAAAGAAAUCUUUACAAAU---AUAAAUUAUCUUCGC------- .((((((((...(((((((((--(.((((.((..(....)....)).)))).)))))).......))---))...))))))))..------- ( -15.31, z-score = -1.72, R) >consensus GGCAAACGGGACAUUUAUUCAAAUAUUUAAUGCGAUUU_GAGGUCAGAUUUGAUUGGUCUUUCAAAUCGCAUUAGUAAUCAACGCUGUAAU_ .............................((((((((..((((((((......))))))))...)))))))).................... ( -7.55 = -8.04 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:13 2011