| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,202,837 – 15,202,929 |
| Length | 92 |
| Max. P | 0.555445 |
| Location | 15,202,837 – 15,202,929 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.18979 |
| G+C content | 0.40169 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -17.19 |
| Energy contribution | -17.08 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15202837 92 - 24543557 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- .....((..((....))..))((((((((....))))))...(((((........)))))....(((((.((......))..)))))))-...-------- ( -20.40, z-score = -1.58, R) >droEre2.scaffold_4784 17464541 92 - 25762168 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- .....((..((....))..))((((((((....))))))...(((((........)))))....(((((.((......))..)))))))-...-------- ( -20.40, z-score = -1.58, R) >droYak2.chr3L 17711667 92 - 24197627 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- .....((..((....))..))((((((((....))))))...(((((........)))))....(((((.((......))..)))))))-...-------- ( -20.40, z-score = -1.58, R) >droSec1.super_0 7315227 92 - 21120651 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- .....((..((....))..))((((((((....))))))...(((((........)))))....(((((.((......))..)))))))-...-------- ( -20.40, z-score = -1.58, R) >droSim1.chr3L 14537098 92 - 22553184 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- .....((..((....))..))((((((((....))))))...(((((........)))))....(((((.((......))..)))))))-...-------- ( -20.40, z-score = -1.58, R) >droPer1.super_12 1192032 92 + 2414086 GUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACCACACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- ....(((((((....))......((((((....))))))........)))))...........((((((.((......))..)))))).-...-------- ( -20.60, z-score = -1.37, R) >dp4.chrXR_group6 12773945 92 + 13314419 GUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACCACACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC-GAC-------- ....(((((((....))......((((((....))))))........)))))...........((((((.((......))..)))))).-...-------- ( -20.60, z-score = -1.37, R) >droAna3.scaffold_13337 5505791 92 + 23293914 AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAACACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAACC-GAC-------- ...(((((.((....))......((((((....))))))...........))))).........(((((.((......))..)))))..-...-------- ( -18.50, z-score = -1.12, R) >droVir3.scaffold_13049 19992944 101 - 25233164 GCAUUGCGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAAUGAGACCAACAGACCGAACGAC ((...(((.((....))...)))((((((....))))))..........))....(((......(((....))).......)))................. ( -19.02, z-score = -0.54, R) >droGri2.scaffold_15110 4390728 100 + 24565398 GCAACACGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAUCGCAAUCUAUUAAUUUGUCAACAAUAAAAUGAGGCUGGGAGACAAACGAC- ......(((((............((((((....))))))......((((................)))).............)))))(....).......- ( -19.89, z-score = -0.77, R) >consensus AUUUUGUGGCCGGAAGGAAGCGCAACACGUAAACGUGUUAAUAUGGACAGCACAAUCUAUUAAUUUGUCAACAAUAAAGUAAGACAAGC_GAC________ ....(((..((....))..))).((((((....))))))...(((((........)))))...((((((.............))))))............. (-17.19 = -17.08 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:10 2011