| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,197,571 – 15,197,665 |
| Length | 94 |
| Max. P | 0.548590 |
| Location | 15,197,571 – 15,197,665 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.54 |
| Shannon entropy | 0.59761 |
| G+C content | 0.35486 |
| Mean single sequence MFE | -11.55 |
| Consensus MFE | -6.85 |
| Energy contribution | -6.77 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15197571 94 - 24543557 -----ACGCCUUGU-------UAUACGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCACACACAGAUACGAAAUUACGAAAA -----.........-------.....((....(((((((....)))))))....((((((......))))))..)).............................. ( -9.30, z-score = 0.50, R) >dp4.chrXR_group6 12770241 82 + 13314419 -----ACGUCUUUUUUCCAAAUGUACGAGUA-AGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACAACACAAA------------------ -----................(((.(((...-(((((((....)))))))....((((((......))))))))).))).........------------------ ( -11.40, z-score = -0.57, R) >droPer1.super_12 1188354 82 + 2414086 -----ACGUCUUUUUUCCAAAUGUACGAGUA-AGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACAACACAAA------------------ -----................(((.(((...-(((((((....)))))))....((((((......))))))))).))).........------------------ ( -11.40, z-score = -0.57, R) >droSim1.chr3L 14531804 94 - 22553184 -----ACGCCUUGU-------UAAACGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCACACACAGAUACGAAAUUACGAAAA -----.........-------.....((....(((((((....)))))))....((((((......))))))..)).............................. ( -9.30, z-score = 0.54, R) >droSec1.super_0 7310001 94 - 21120651 -----ACGCCUUGU-------UAAACGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACAGCACACACAGAUACGAAAUUACGAAAA -----..((..(((-------...........(((((((....)))))))....((((((......))))))..)))..))......................... ( -10.70, z-score = 0.59, R) >droYak2.chr3L 17705563 81 - 24197627 -----ACGCCUUGU-------UAUGCGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCACACACAGAUAC------------- -----......(((-------..((.((....(((((((....)))))))....((((((......))))))..)).))..))).........------------- ( -11.80, z-score = -0.83, R) >droEre2.scaffold_4784 17459500 101 - 25762168 -----ACGCCUUGUUAUACGCUAUACGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCACACACAGAUACGAGAAUACGAAUA -----.............((.(((...(((..(((((((....)))))))....((((((......)))))).....................))).))))).... ( -11.40, z-score = 0.55, R) >droAna3.scaffold_13337 5500889 76 + 23293914 -----ACGCCUUCU-------GAUAUGCGGAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACACAACACA------------------ -----.........-------....(((((..(((((((....)))))))....((((((......)))))))))))...........------------------ ( -12.70, z-score = -1.40, R) >droMoj3.scaffold_6680 7692085 87 - 24764193 ------------ACGCCCCGUGAAACGAUUUAAGUUCAAUA-CUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCAGGCUCCAAAAACAACUCC------ ------------..(((..(((...(((((((((.(((((.-..((((.....))))))))).)))))...))))..)))..)))...............------ ( -14.90, z-score = -2.41, R) >droGri2.scaffold_15110 4387141 101 + 24565398 ACGCCCCGUUACGCUACCCAUGAAUCGAUUUAGGUUCAAUA-CUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCAGGCUCC-AUAACAACUCCAUG--- ..(((..((...((((..((.((.((((((.(((((((...-..))))).))....)))))))).))..))...))..))..)))...-..............--- ( -13.90, z-score = -0.82, R) >droVir3.scaffold_13049 19989350 86 - 25233164 ------------UCCACCCGUGAAACGAUUUAAGUUCAAUA-CUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCAGGCUCC-AUAACAACUCC------ ------------.......((((...(((((((((.....)-)))))).))...((((((......))))))))))............-...........------ ( -10.20, z-score = -0.74, R) >consensus _____ACGCCUUGU_______UAUACGCUCAUAGUUCAAUAGUUUGAACUCUUUUUAAUUGAUCUUGAUUAAUCGCACACCACACACA_AUAC_AA_U________ ................................(((((((....)))))))....((((((......)))))).................................. ( -6.85 = -6.77 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:09 2011