| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,191,265 – 15,191,358 |
| Length | 93 |
| Max. P | 0.551593 |
| Location | 15,191,265 – 15,191,358 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Shannon entropy | 0.48231 |
| G+C content | 0.34318 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -7.53 |
| Energy contribution | -8.17 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.551593 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15191265 93 + 24543557 ------AAAUAAUUAUACACUAAUGAGGCACCGACGCAUACGUACCUCGAACAUUAUAAUUGAUGAAAUUGUAAGCCUCGGCUCUGUUUUCACAAAUAA ------..........(((....((((((....(((....)))..........((((((((.....))))))))))))))....)))............ ( -16.00, z-score = -1.25, R) >droSim1.chr3L 14525498 93 + 22553184 ------AAAUAAUUAUACACUAAUGAGGCACCGACGCAUACGUACCUCGAACAUUAUAAUUGAUGAAAUUGUAAGCCUCGGCUCUGUUUUCACAAAUAA ------..........(((....((((((....(((....)))..........((((((((.....))))))))))))))....)))............ ( -16.00, z-score = -1.25, R) >droSec1.super_0 7303703 93 + 21120651 ------AAAUAAUUAUACACUAAUGAGGCACCGACGCAUACGUACCUCGGACAUUAUAAUUGAUGAAAUUGUAAGCCUCGGCUGUGUUUUCACAAAUAA ------..........((((...((((((.((((.(........).))))...((((((((.....))))))))))))))...))))............ ( -23.30, z-score = -3.03, R) >droYak2.chr3L 17698678 93 + 24197627 ------AAAUAAUUACACACUAAUGAGGCACCGACGCAUACCUAUAGCGACCAUUAUAAUUGAUGAAAUUUUAAGCCUCGGCUGUGUUUUCACAAAUAA ------..........((((...((((((.....(((.........)))..(((((....))))).........))))))...))))............ ( -20.30, z-score = -3.04, R) >droEre2.scaffold_4784 17453223 86 + 25762168 ------AAAUAAUUAUACACUAAUGAGGCACCGACGCAUACCUA-------CAUUAUAAUUGAUGAAAUUGUAAGCCUCCACUGUGUUUUCACAAAUAA ------..........((((....(((((......(........-------).((((((((.....)))))))))))))....))))............ ( -14.60, z-score = -1.96, R) >droMoj3.scaffold_6680 7684806 89 + 24764193 UUAUUUAGUUAGUCUUACAUUGACGAUGCUGCUAAGAGCCUUUGGCUAAGAGUUUAUAGAUAAUGA----------UUUGAUUUGAUAAGAGCAAAUAA (((((((((..(((.......)))...)).(((...((((...))))...)))...)))))))..(----------((((.(((....))).))))).. ( -14.50, z-score = 0.16, R) >consensus ______AAAUAAUUAUACACUAAUGAGGCACCGACGCAUACGUACCUCGAACAUUAUAAUUGAUGAAAUUGUAAGCCUCGGCUGUGUUUUCACAAAUAA .......................((((((....(((....)))........(((((....))))).........))))))................... ( -7.53 = -8.17 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:08 2011