| Sequence ID | dm3.chr2L |
|---|---|
| Location | 592,983 – 593,038 |
| Length | 55 |
| Max. P | 0.602829 |
| Location | 592,983 – 593,038 |
|---|---|
| Length | 55 |
| Sequences | 9 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 65.71 |
| Shannon entropy | 0.66517 |
| G+C content | 0.52673 |
| Mean single sequence MFE | -14.15 |
| Consensus MFE | -6.49 |
| Energy contribution | -6.33 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.60 |
| Mean z-score | -0.79 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602829 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 592983 55 - 23011544 --------ACCUGGUCGCAACUUUU-UUCCCCAGCUUGCUGCAACCGGAAACGGAAGCCACACA --------...((((.((((((...-......)).)))).....(((....)))..)))).... ( -12.50, z-score = -0.42, R) >droPer1.super_1 7810254 52 + 10282868 ----------AUGGGGGGAAACGGU-UUUUUUGGUUU-UGGGAACCGGAAACGGAAGCCACACA ----------......(....)(((-((((..(((((-...)))))(....))))))))..... ( -12.90, z-score = -0.72, R) >dp4.chr4_group3 10697150 51 + 11692001 ----------AUGGGGGGAAACCG--UUUUUUGGUUU-UGGGAACCGGAAACGGAAGCCACACA ----------.(((...(((((((--.....))))))-).....(((....)))...))).... ( -15.80, z-score = -1.24, R) >droEre2.scaffold_4929 648673 55 - 26641161 --------ACCUGGGCGCAACUUUU-UUCCCCAGCUUGCUGCAACCGGAAACGGAAGCCUCACA --------....((((((((((...-......)).)))).....(((....)))..)))).... ( -15.10, z-score = -0.81, R) >droYak2.chr2L 581573 55 - 22324452 --------ACCUGGGCGCAACUUUU-UUCCCCGGCUUGCUGCAACCGGAAACGGAAGCCUCACA --------....((((((((((...-......)).)))).....(((....)))..)))).... ( -15.10, z-score = -0.30, R) >droSec1.super_14 575590 55 - 2068291 --------ACCUGGGCGCAACUUUU-UUCCCCAGCUUGCUGCAACCGGAAACGGAAGCCACACA --------..(((((..........-...)))))..((..((..(((....)))..))..)).. ( -14.92, z-score = -0.81, R) >droSim1.chr2L 599424 55 - 22036055 --------ACCUGGGCGCAACUUUU-UUCCCCAGCUUGCUGCAACCGGAAACGGAAGCCACACA --------..(((((..........-...)))))..((..((..(((....)))..))..)).. ( -14.92, z-score = -0.81, R) >droWil1.scaffold_180772 6259942 55 + 8906247 -------ACUGUGUGUGUUUCUCUUCUUCUUCGUUUUUUUGCAACCGGAAACGGAAGCCACA-- -------....((((.(((((...........((......))...((....)))))))))))-- ( -12.30, z-score = -1.30, R) >droMoj3.scaffold_6500 8213744 63 + 32352404 UGGCUUCCACAUGCGCCACAUUCAAAUUCAAAGGCCCUCGUCGCCUAGGCAUGAAUGAAUUAA- ((((..........))))((((((........(((....)))((....)).))))))......- ( -13.80, z-score = -0.68, R) >consensus ________ACCUGGGCGCAACUUUU_UUCCCCGGCUUGCUGCAACCGGAAACGGAAGCCACACA ........................................((..(((....)))..))...... ( -6.49 = -6.33 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:12 2011