| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,183,262 – 15,183,337 |
| Length | 75 |
| Max. P | 0.997935 |
| Location | 15,183,262 – 15,183,337 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 81.42 |
| Shannon entropy | 0.35701 |
| G+C content | 0.29260 |
| Mean single sequence MFE | -12.77 |
| Consensus MFE | -11.55 |
| Energy contribution | -11.63 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15183262 75 + 24543557 UCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUGAAC (((.((..................((((((((.((((........)))).))))))))((....)).)).))).. ( -14.50, z-score = -3.56, R) >droAna3.scaffold_13337 5485592 61 - 23293914 ------AAUUUAG----AUUCAAAUAUACCCAAAAUAAAUCUAG--CUACUGGGUAUAACAAGAACAGUAAUA-- ------.......----.......((((((((............--....))))))))...............-- ( -8.69, z-score = -1.73, R) >droEre2.scaffold_4784 17445288 75 + 25762168 UCAAUUAAUUGAGCAUUAAUCAAGUAUACUCAGUAGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUGAAC (((.....((((.......)))).((((((((.((((........)))).))))))))............))).. ( -15.00, z-score = -2.94, R) >droYak2.chr3L 17690831 75 + 24197627 UCAAUCAAUUGGGCAUUAAUCAAGUAUACUCGAUGGUAAUUCAAAACUAGUGGGUAUAGCCAAAACAGAAUAAAC ...........(((..........((((((((.((((........)))).))))))))))).............. ( -12.40, z-score = -1.77, R) >droSec1.super_0 7295664 75 + 21120651 UCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAAC ........................((((((((.((((........)))).))))))))................. ( -13.00, z-score = -3.80, R) >droSim1.chr3L 14517535 75 + 22553184 UCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGUCAAAACAGAAUAAAC ........................((((((((.((((........)))).))))))))................. ( -13.00, z-score = -3.80, R) >consensus UCAAUCAAUUAGGCAUUAAUCAAGUAUACUCAGUAGUAAUUUAAAACUAGUGGGUAUAGCCAAAACAGAAUAAAC ........................((((((((.((((........)))).))))))))................. (-11.55 = -11.63 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:07 2011