| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,144,320 – 15,144,410 |
| Length | 90 |
| Max. P | 0.915409 |
| Location | 15,144,320 – 15,144,410 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.29 |
| Shannon entropy | 0.27150 |
| G+C content | 0.27150 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -11.42 |
| Energy contribution | -14.87 |
| Covariance contribution | 3.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.915409 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15144320 90 + 24543557 CGAAUCAUUAAAUAUGCACUUAAAUA-UAUUCAAGUGAUAUGGUAAAAUCAAAUCACAAAUGUUGGUUCAGAAAAUACCCUAACAUUCUUA------------------------ .((((((....((((........)))-)......(((((.((((...)))).)))))......))))))......................------------------------ ( -12.60, z-score = -1.08, R) >droSec1.super_0 7256965 115 + 21120651 CGCAUCAUUAAAGAUGCACUUAAAGAAUAUUCAAGUGAUAUGGUAAAAUCAAAUCACAAAUGUUGGUUCAAAAAAUACCCUAAGUUUUGAAUUAACUAUUUAAGUUGCAUUCUUA .(((((......))))).....((((((......(((((.((((...)))).)))))((((((((((((((((...........)))))))))))).)))).......)))))). ( -27.20, z-score = -4.12, R) >droSim1.chr3L 14478369 115 + 22553184 CGCAUCAUUAAAGAUGCACUUAAAGAAUAUUCAAGUGAUAUGGUAAAAUCAAAUCACAAAUGUUGGUUCAGAAAAUACCCUAAGUUUUGAAUUAACUAUUUAAGUUGCAUUCUUA .(((((......))))).....((((((......(((((.((((...)))).)))))((((((((((((((((...........)))))))))))).)))).......)))))). ( -27.30, z-score = -3.78, R) >consensus CGCAUCAUUAAAGAUGCACUUAAAGAAUAUUCAAGUGAUAUGGUAAAAUCAAAUCACAAAUGUUGGUUCAGAAAAUACCCUAAGUUUUGAAUUAACUAUUUAAGUUGCAUUCUUA .(((((......))))).................(((((.((((...)))).)))))....((((((((((((...........))))))))))))................... (-11.42 = -14.87 + 3.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:03 2011