Locus 7494

Sequence ID dm3.chr3L
Location 15,139,285 – 15,139,341
Length 56
Max. P 0.980893
window10322 window10323

overview

Window 2

Location 15,139,285 – 15,139,341
Length 56
Sequences 3
Columns 60
Reading direction forward
Mean pairwise identity 85.00
Shannon entropy 0.21008
G+C content 0.33955
Mean single sequence MFE -12.70
Consensus MFE -11.29
Energy contribution -11.73
Covariance contribution 0.45
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.94
SVM RNA-class probability 0.857081
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 15139285 56 + 24543557
AUGAGAGAAU---CAUAUAGGAUGGACCUGA-GGGUAGUUUAGUAUCCAAACUAUAUGAA
.........(---(((((((..((((.((((-(.....)))))..))))..)))))))). ( -16.10, z-score =  -3.00, R)
>droSim1.chr3L 14473606 58 + 22553184
AUGAGAGAAUAUACAUAUAGGAUGGACCUGAUGGGUUAUUUAGUAUCCAAGCUAUAUG--
.............(((((((..((((.((((........))))..))))..)))))))-- ( -12.10, z-score =  -1.19, R)
>droSec1.super_0 7252269 60 + 21120651
AUGAGAAAAUAUUCAUAAAGGAUGGACCUGAUGGGUUAUUAAGUAUCCAAACUAUGUGAA
...........((((((.((..((((((....))...........))))..)).)))))) (  -9.90, z-score =  -0.50, R)
>consensus
AUGAGAGAAUAU_CAUAUAGGAUGGACCUGAUGGGUUAUUUAGUAUCCAAACUAUAUGAA
.............(((((((..((((.((((........))))..))))..))))))).. (-11.29 = -11.73 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 15,139,285 – 15,139,341
Length 56
Sequences 3
Columns 60
Reading direction reverse
Mean pairwise identity 85.00
Shannon entropy 0.21008
G+C content 0.33955
Mean single sequence MFE -11.35
Consensus MFE -9.96
Energy contribution -10.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.06
SVM RNA-class probability 0.980893
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 15139285 56 - 24543557
UUCAUAUAGUUUGGAUACUAAACUACCC-UCAGGUCCAUCCUAUAUG---AUUCUCUCAU
.((((((((..(((((............-....)))))..)))))))---)......... ( -14.69, z-score =  -3.80, R)
>droSim1.chr3L 14473606 58 - 22553184
--CAUAUAGCUUGGAUACUAAAUAACCCAUCAGGUCCAUCCUAUAUGUAUAUUCUCUCAU
--(((((((..(((((.................)))))..)))))))............. ( -11.53, z-score =  -2.40, R)
>droSec1.super_0 7252269 60 - 21120651
UUCACAUAGUUUGGAUACUUAAUAACCCAUCAGGUCCAUCCUUUAUGAAUAUUUUCUCAU
((((...((..(((((.................)))))..))...))))........... (  -7.83, z-score =  -0.85, R)
>consensus
UUCAUAUAGUUUGGAUACUAAAUAACCCAUCAGGUCCAUCCUAUAUG_AUAUUCUCUCAU
..(((((((..(((((.................)))))..)))))))............. ( -9.96 = -10.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:28:02 2011