Locus 7492

Sequence ID dm3.chr3L
Location 15,125,697 – 15,125,779
Length 82
Max. P 0.716847
window10319

overview

Window 9

Location 15,125,697 – 15,125,779
Length 82
Sequences 5
Columns 85
Reading direction forward
Mean pairwise identity 78.12
Shannon entropy 0.38107
G+C content 0.51800
Mean single sequence MFE -25.26
Consensus MFE -13.66
Energy contribution -14.10
Covariance contribution 0.44
Combinations/Pair 1.36
Mean z-score -1.94
Structure conservation index 0.54
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.49
SVM RNA-class probability 0.716847
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 15125697 82 + 24543557
AGCAGACGAGCUACUUCGUGUGACUCUUGUUCAUCAUCCAUUUGGUGAUGCUCUUCCUCG---UGCAUCGCCAAUUGAUGUUCCU
..((.(((((....))))).))......(..(((((.....((((((((((.(......)---.)))))))))).)))))..).. ( -26.50, z-score =  -3.34, R)
>droSim1.chr3L 14457489 82 + 22553184
AGCAGACGAGCUACUUCGUGUGACUCUUGUUCAUCAUCCAUUUGGGGAUGCCCUUCCUCG---UGCAUCGCCAAUUGUUGUUGCU
(((((..(((.(((.....))).)))............((.((((.(((((.(......)---.))))).)))).))...))))) ( -22.40, z-score =  -1.05, R)
>droSec1.super_0 7238655 82 + 21120651
AGCAGAGGAGCUACUUCGUGUGACUCUUGUUCAUCAUCCAUUUGCUGAUGCUCUUCCUCG---UGCAUCGCCAAUUGAUGUUGCU
((((((((((.(((.....))).)))))......((((.(((.((.(((((.(......)---.))))))).))).))))))))) ( -23.30, z-score =  -1.37, R)
>droEre2.scaffold_4784 15082308 85 + 25762168
AACAGUCGUGCUUCCUCGUGCGCCUCUGGUUCAUCAUCCAUAUGGUGAUGCUCUUCCUCGUGAUGCAUCGCCAAUUGAUGUUGCU
..(((..((((........))))..)))((.(((((......(((((((((((........)).)))))))))..)))))..)). ( -29.60, z-score =  -3.99, R)
>anoGam1.chrX 7786524 79 - 22145176
GGCAGUCGAGCCUCCUCCAGCGGCUGUUGAGCCUCCUCCAGCGGCUGUUGAUCCUCCUC------CAGCAGCAGUUGAUCCUCCU
(((......))).....((((((((((((((....)).)))))))))))).........------((((....))))........ ( -24.50, z-score =   0.06, R)
>consensus
AGCAGACGAGCUACUUCGUGUGACUCUUGUUCAUCAUCCAUUUGGUGAUGCUCUUCCUCG___UGCAUCGCCAAUUGAUGUUGCU
((((...(((.(((.....))).)))............((.((((((((((.............)))))))))).)).))))... (-13.66 = -14.10 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:58 2011