Locus 7491

Sequence ID dm3.chr3L
Location 15,122,079 – 15,122,199
Length 120
Max. P 0.783155
window10318

overview

Window 8

Location 15,122,079 – 15,122,199
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.69
Shannon entropy 0.31791
G+C content 0.45116
Mean single sequence MFE -33.12
Consensus MFE -29.55
Energy contribution -30.05
Covariance contribution 0.50
Combinations/Pair 1.30
Mean z-score -1.08
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.68
SVM RNA-class probability 0.783155
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15122079 120 + 24543557
UUUUAUGCUGUCUAUAAGAUAGCAGUGGUGUCCGUGGACUAUAUGGAGGAGUCUGGACCUGCUGCGAAACAGACUGCUUAUAGGUAAUGUGCUGAAUUUCUCUUGGUGUUCUUGGACUAU
.....(((((((.....))))))).....(((((.((((.....((((((((..(((((((..(((........)))...)))))......))..))))))))....)))).)))))... ( -35.10, z-score =  -1.50, R)
>droSim1.chr3L 14453847 120 + 22553184
UUUUAUGCUGGCUAUAAGAUAGCGGUGGUGUCCGUGGACUAUAUGGAAGAGUCUGGACUUGUUGCGGAACAGGCUGCUUAUAGGUAAUGUGCUGGAUUUCUCCUUGUGUUCUUGGACUAC
......((((.((((...))))))))...(((((.((((.(((.(((..((((..(((((((.((((......))))..))))))......)..))))..))).))))))).)))))... ( -36.00, z-score =  -1.49, R)
>droSec1.super_0 7235076 120 + 21120651
UUUUAUGUUGGCUAUAAGAUAGCGGUGGUGUCCGUGGACUAUAUGGAUGAGUCUGGACUUGUUGCGGAACAGGCUGCUUAUAGGUAAUGUGCUGGAUUUCUCCUUGUGUUCUUGGACUAC
..........(((((...)))))......(((((.((((.(((.(((.(((((..(((((((.((((......))))..))))))......)..))))).))).))))))).)))))... ( -34.50, z-score =  -1.40, R)
>droEre2.scaffold_4784 15078929 108 + 25762168
UUUUAUGUUGUCUAUAAGAUUGCGGCGGUGUUCUCGUACUAUAUGGGGGAGUCUGGAUGUGGUA-----------GUCAUCAUGCGAU-UGCUGCACUUCUCUUGGUGUUCUGGGACUAC
.........((((...(((..(((.((.....((((((...))))))((((...((.((..(((-----------(((.......)))-)))..)))).)))))).)))))).))))... ( -26.90, z-score =   0.07, R)
>consensus
UUUUAUGCUGGCUAUAAGAUAGCGGUGGUGUCCGUGGACUAUAUGGAGGAGUCUGGACUUGUUGCGGAACAGGCUGCUUAUAGGUAAUGUGCUGGAUUUCUCCUGGUGUUCUUGGACUAC
.....(((((((.....))))))).....(((((.((((.(((.(((((((((((((((((..((((......))))...)))))......)))))))))))).))))))).)))))... (-29.55 = -30.05 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:58 2011