| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,276,766 – 5,276,919 |
| Length | 153 |
| Max. P | 0.767769 |
| Location | 5,276,766 – 5,276,919 |
|---|---|
| Length | 153 |
| Sequences | 5 |
| Columns | 158 |
| Reading direction | reverse |
| Mean pairwise identity | 62.19 |
| Shannon entropy | 0.68593 |
| G+C content | 0.36121 |
| Mean single sequence MFE | -35.50 |
| Consensus MFE | -12.39 |
| Energy contribution | -13.96 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5276766 153 - 23011544 AAGUCACGUACGAAGUGGCGAUACAACUUCUGGUUAUGUAUGCAAAAUUGCAUAGUAAACAGAUUUUGUUUAAUCGUU-AUUAUUGCUGAUACAGUAGAGCAUGCCUAAGUAGCACUACCAAAGCAAACAAAU----UAUCUUAAAUAUACAUCAUGA .......(((...(((((((((((((..((((.((((.((((((....)))))))))).))))..))))...))))))-))).(((((......((((.((.(((....))))).))))...)))))......----...........)))....... ( -35.20, z-score = -1.50, R) >droSim1.chr2L 5078811 156 - 22036055 AAGUCACGUACGAAGUGGCGAUACAACUUCUGGUUAUAUAUGCAAAAUUGCAUAGUAAACAGAUUUUGUUUAAUCGUU-AUUAUUGCUGAUACAGUAGAACAUGGCUAAGAACUACU-CCAAGGCAAACAAAUGAAGCACUUAAAAUAUACACUAUGA .(((((.((....(((((((((((((..((((.((((.((((((....)))))))))).))))..))))...))))))-))).((((((...)))))).)).)))))..........-..(((((...........)).)))................ ( -32.80, z-score = -1.11, R) >droYak2.chr2L 8402829 150 + 22324452 AAGUCACGUACGAAGUGGCGAUACAACUUUUGGUUAUGUAUGCAAAAGUGCAUAGUAAACAGAUUUUGUUUAAUCGUUAAUUAUUGCUGGUACGGUAGAACACCACUAAGUACCA----CAAUGCAAAUGAA----GUAUCUUCAAUAAACAUUAUGA ..(((((.......)))))((((((((.((((.((((.((((((....)))))))))).))))....)))...(((((...(((((.((((((..(((.......))).))))))----)))))..))))).----)))))................. ( -35.70, z-score = -1.46, R) >droEre2.scaffold_4929 5356894 128 - 26641161 AAGUCACGUACGAAGCGGCGAUACAACUUCUGGUUAUGUAUGCAAAAGUGCAUAGUAUACAGAUUUUGUUUAAUCGUUAAUUAUUGCUGGUACAGUGGAGCCCCACUAGGUACCG---AAAUACUUUAUGA--------------------------- ......((((......((((((((((..((((..(((.((((((....)))))))))..))))..))))...))))))...((((..(((((((((((....)))))..))))))---.))))...)))).--------------------------- ( -34.40, z-score = -1.64, R) >dp4.chr4_group3 7076661 137 - 11692001 --GAUCUUCACGAGGGAAGGAUA--------AGGAAUGGAAG-ACAACUGCAUUGAAGAAAUAAUUU-UUCAACGUGUAACCGUACCUUCUAUAGCAGCUCCCUCUUUUUGGAGG----GAAAUCUGACAUUCUUCUGGGCUUAAAUUGUCCU----- --..(((((......)))))...--------(((((((..((-(...((((..(((((((....)))-))))(((......)))..........)))).(((((((....)))))----))..)))..)))))))..((((.......)))).----- ( -39.40, z-score = -1.84, R) >consensus AAGUCACGUACGAAGUGGCGAUACAACUUCUGGUUAUGUAUGCAAAAGUGCAUAGUAAACAGAUUUUGUUUAAUCGUUAAUUAUUGCUGAUACAGUAGAACACCACUAAGUACCA____CAAAGCAAACAAA_____UAUCUUAAAUAUACAU_AUGA .......((((..(((((((((((((..((((......((((((....)))))).....))))..))))...))))....((((((......))))))....)))))..))))............................................. (-12.39 = -13.96 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:38 2011