| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,097,092 – 15,097,205 |
| Length | 113 |
| Max. P | 0.823984 |
| Location | 15,097,092 – 15,097,205 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.04 |
| Shannon entropy | 0.27058 |
| G+C content | 0.56283 |
| Mean single sequence MFE | -29.14 |
| Consensus MFE | -16.44 |
| Energy contribution | -18.04 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823984 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15097092 113 + 24543557 AUCGGAAAGUUCGGUGCGGCUGGCCAAUCGCACUUGCCCCUUACAAUACAGCGUUGUAUUACGACCUCGCUGCCAGCCACCUCCGUUGUUCCACCCAACGCCACCCACCUCAC ...((((....(((.(.(((((((.....((....))............((((..((......))..))))))))))).)..)))...))))..................... ( -32.00, z-score = -2.19, R) >droEre2.scaffold_4784 15052685 113 + 25762168 AUCGGAAAAUUCGGAGCGGCCGGCCAAUCGCACUUGCCCCUUACAAUACAGCGUUGUAUUACGACCUCGCUGCCAGCCACCUCCGUUUUUCCGCCCAACGCCACCCACCUCAC ..(((((((..(((((.(((.(((.....((....))............((((..((......))..))))))).)))..))))).))))))).................... ( -32.80, z-score = -3.19, R) >droYak2.chr3L 15189494 113 + 24197627 AUCGGAAAAUUCGGUGCGGCCGGCCAAUCGCACUUGCCCCUUACAAUACAGCGUUGUAUUACGACCUCGCUGCCAGCCACCUCCGUUUUUCCACCCAACGCCACCCACCUCAC ...((((((..(((.(.(((.(((.....((....))............((((..((......))..))))))).))).)..))).))))))..................... ( -28.80, z-score = -2.23, R) >droSec1.super_0 7209507 113 + 21120651 AUCGGAAAGUUCGGUGCGGCUGGCCAAUCGCACUUGCCCCUUACAAUACAGCGUUGUAUUACGACCUCGCUGCCAGCCACCUCCGUUUUUCCACCCAACGCCACCCACCUCAC ...((((((..(((.(.(((((((.....((....))............((((..((......))..))))))))))).)..))).))))))..................... ( -33.10, z-score = -3.17, R) >droSim1.chrU 1319564 113 - 15797150 UACGUAAACCUCGGCGCCGAUGGGCGAGCACUCUUGCCCCUCACAAUAUUUCGAUGCAAUACGACCUCACAGCCUACCCCCUUUUUUUUACCACCCUUCACAAUACACAUCAU ............(((...((.(((((((....))))))).))........(((........))).......)))....................................... ( -19.00, z-score = -2.04, R) >consensus AUCGGAAAAUUCGGUGCGGCUGGCCAAUCGCACUUGCCCCUUACAAUACAGCGUUGUAUUACGACCUCGCUGCCAGCCACCUCCGUUUUUCCACCCAACGCCACCCACCUCAC ...((((((..(((.(.(((.(((.....((....))............((((..((......))..))))))).))).)..))).))))))..................... (-16.44 = -18.04 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:52 2011