| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,096,093 – 15,096,193 |
| Length | 100 |
| Max. P | 0.568260 |
| Location | 15,096,093 – 15,096,193 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Shannon entropy | 0.45030 |
| G+C content | 0.60820 |
| Mean single sequence MFE | -42.40 |
| Consensus MFE | -20.96 |
| Energy contribution | -22.19 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568260 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15096093 100 - 24543557 -------UGGGAG-GCAGCCACUCAA-C---UCAGACGCCAGCAACG-CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGUCGUUGGAGAGUUGGGCUGGAGAGCCGCCACAG -------((((.(-((..((((((((-(---((.((((.((((..((-(.(((((..((......)))))))))).)))).))))...)))))))).)))...))).)).)). ( -45.00, z-score = -2.12, R) >droEre2.scaffold_4784 15051679 107 - 25762168 -UGGGAGGCGAUG-GGAGCCACUCAACC---UCAGACGCCAGCAACG-CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGUCGUUGGAGAGUUGGGCUGGAGAGCCGCCACAG -((((.(((....-....((((((((((---((.((((.((((..((-(.(((((..((......)))))))))).)))).)))).))).)))))).)))...))).)).)). ( -44.00, z-score = -0.91, R) >droYak2.chr3L 15188532 101 - 24197627 -------UGGGAG-GCAGCCACUCAACC---UCAGACGCCAGCAACG-CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGCCGUUGGAGAGUUGGGCUGUAGAGCCGCCACAG -------..((..-((((((...(((((---((.((((.((((..((-(.(((((..((......)))))))))).)))).)))).))).))))))))))....))....... ( -41.20, z-score = -0.94, R) >droSec1.super_0 7208653 100 - 21120651 -------UGGAAG-GCAGCCACUCAA-C---UCAGACGCCAGCAACG-CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGUCGUUGGAGAGUUGGGCUGGAGAGCCGCCACAG -------(((..(-((..((((((((-(---((.((((.((((..((-(.(((((..((......)))))))))).)))).))))...)))))))).)))...))).)))... ( -43.40, z-score = -1.98, R) >droSim1.chr3L 14415280 100 - 22553184 -------UGGGAG-GCAGCCACUCAA-C---UCAGACGCCAGCAACG-CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGUCGUUGGAGAGUUGGGCUGGAGAGCCGCCACAG -------((((.(-((..((((((((-(---((.((((.((((..((-(.(((((..((......)))))))))).)))).))))...)))))))).)))...))).)).)). ( -45.00, z-score = -2.12, R) >droMoj3.scaffold_6496 17320460 112 - 26866924 GUCAAGGUAGCAGCUCGACUAGUAGAUUAAAUUAAACG-CAGCAACAUUGCAGCUGCAGCUGCAGCCCAAGGUGGAGCAACUGCAGCCAGGCAAUGUAGAGGGACAACAACAU (((.........(((((..((((.......))))..))-.))).(((((((.(((((((.(((.(((...)))...))).)))))))...))))))).....)))........ ( -35.80, z-score = -1.68, R) >consensus _______UGGGAG_GCAGCCACUCAA_C___UCAGACGCCAGCAACG_CGUAGCAACGGUCACAUCCUGCUGGCGAGCUGUCGUUGGAGAGUUGGGCUGGAGAGCCGCCACAG ...............(((((((((........(((.((((((((.....((.((....)).))....))))))))..)))........))))..))))).............. (-20.96 = -22.19 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:51 2011