| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,087,005 – 15,087,151 |
| Length | 146 |
| Max. P | 0.679008 |
| Location | 15,087,005 – 15,087,151 |
|---|---|
| Length | 146 |
| Sequences | 8 |
| Columns | 168 |
| Reading direction | forward |
| Mean pairwise identity | 77.83 |
| Shannon entropy | 0.39965 |
| G+C content | 0.41734 |
| Mean single sequence MFE | -40.62 |
| Consensus MFE | -24.43 |
| Energy contribution | -23.76 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679008 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15087005 146 + 24543557 AUGACUUAAUAUCAAACGUGCAAAAGUCGUUGAAUUAAGUGCGCCUACAGUGGAUGCUCGCUGAGAGGAACCAAACUG-----------------GUUUUUUCUCCGCAUUCUUAAU-AAUUUUCA----UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU ...(((((((.((((.((.((....)))))))))))))))(((((......)).)))..((.((((((((((.....)-----------------).)))))))).)).........-........----..(((((((((..((.......))..)))))))))... ( -40.20, z-score = -2.07, R) >droPer1.super_12 1080644 165 - 2414086 AUGACUUAAUAACAAACGUGCGAAAUUCGACAA---AAAUGCCAAUACAGUGGCUGCUCGCCCAAAGGGAUCAGAUCACAUUCAAAUUUUUUUCUGUUUCCCUUCCGUUAUUUCAUUCAGACGCCAAGCCCUGUGGGGGUUGGUUUCUAAUUAGUGAGCCUUCUCUGU .................((.((.....))))..---..........((((.((..((((((...((((((.((((.................))))..))))))..............(((.(((((.(((....))).))))).))).....))))))..)).)))) ( -42.43, z-score = -1.22, R) >dp4.chrXR_group6 12662830 165 - 13314419 AUGACUUAAUAACAAACGUGCGAAAUUCGACAA---AAAUGCCAAUACAGUGGCUGCUCGCCCAAAGGGAUCAGAUCACAUUCAAAUUUUUUUCUGUUUCCCUUCCGUUAUUUCAUUCAGACGCCAAGCCCUGUGGGGGUUGGUUUCUAAUUAGUGAGCCUUCUCUGU .................((.((.....))))..---..........((((.((..((((((...((((((.((((.................))))..))))))..............(((.(((((.(((....))).))))).))).....))))))..)).)))) ( -42.43, z-score = -1.22, R) >droAna3.scaffold_13337 5394602 147 - 23293914 AUGACUUAAUAUCAAACGUGCAAAAGUCGUCGAAUGAAGUGCCAUUACAGUGGAUGCUCGCUGAGAGGAACCAAACUG-----------------GUUUUCCUUCAAAAACAUGCAUGCAUGUUCG----CUGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU ..............(((((((.....((((...)))).((((.....((((((....))))))((..(((((.....)-----------------))))..))..........))))))))))).(----(.(((((((((..((.......))..))))))))).)) ( -39.00, z-score = -0.76, R) >droEre2.scaffold_4784 15043567 146 + 25762168 AUGACUUAAUAUCAAACGUGCAAAAGUCGUUGAAAUAAGUGCGCCUACAGUGGAUGCUCGUUGAGAGGAACCAAACUG-----------------GUUCUUUCUCCGCAUUCUUAAU-AAUUUCCA----UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCGCUGU ...(((((...((((.((.((....))))))))..)))))......((((((((.(.((((.((((((((((.....)-----------------)))).))))).))........(-(((..((.----....))..)))).............)).).)))))))) ( -40.00, z-score = -1.87, R) >droYak2.chr3L 15180385 146 + 24197627 AUGACUUAAUAUCAAACGUGCAAAAGUCGUUGAAGUAAGUGCGCCUACAGUGGAUGCUCGUUGAGAGGAACCAAACUG-----------------GUUUUUUCUCCGCAUUCUUAAU-AAUUUCCA----UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU ...(((((...((((.((.((....))))))))..)))))......((((((((.(.((((.((((((((((.....)-----------------).)))))))).))........(-(((..((.----....))..)))).............)).).)))))))) ( -38.80, z-score = -1.44, R) >droSec1.super_0 7201102 146 + 21120651 AUGACUUAAUAUCAAACGUGCAAAAGUUGUUGAAUUAAGUGCGCCUACAGUGGAUGCUCGCUGAGAGGAACCAAACUG-----------------GUUUUUUCUCCGCAUUCUUAAU-CAUUUCCA----UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU ...(((((((.((((....((....))..)))))))))))......((((((((.(.((((.((((((((((.....)-----------------).)))))))).))......(((-(((..((.----....))..).)))))..........)).).)))))))) ( -40.40, z-score = -1.89, R) >droSim1.chr3L 14406569 146 + 22553184 AUGACUUAAUAUCAAACGUGCAAAAGUCGUUGGAUUAAGUGCGCCUACAGUGGAUGCUCGCUGAGAGGAACCAAACUG-----------------GUUUUUUCUCCGCAUUCUUAAU-CAUUUCUA----UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU (((((((................)))))))..(((((((.(((((......)).)))..((.((((((((((.....)-----------------).)))))))).))...))))))-).......----..(((((((((..((.......))..)))))))))... ( -41.69, z-score = -2.11, R) >consensus AUGACUUAAUAUCAAACGUGCAAAAGUCGUUGAAUUAAGUGCGCCUACAGUGGAUGCUCGCUGAGAGGAACCAAACUG_________________GUUUUUUCUCCGCAUUCUUAAU_AAUUUCCA____UCGUGGGGGUUGGUUUCUAAUUAAAGAACCUCCACUGU .((((((................)))))).................((((((((.(.((......(((((((((...........................(((((((........................)))))))))))))))).......)).).)))))))) (-24.43 = -23.76 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:49 2011