| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,073,600 – 15,073,695 |
| Length | 95 |
| Max. P | 0.805350 |
| Location | 15,073,600 – 15,073,695 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 97.89 |
| Shannon entropy | 0.02900 |
| G+C content | 0.35439 |
| Mean single sequence MFE | -17.27 |
| Consensus MFE | -17.23 |
| Energy contribution | -17.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.21 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15073600 95 + 24543557 AAAGUUCUUUUGGCACACGCUUGUGGCAGCAUGAUUUUCAUGUUGCUCUGUUUUUAGAUCUCUCGUAUUUUUCCUCUUGCUUUCAUUUAAAAUUU ..((.(((...(((((((....)))((((((((.....))))))))..))))...))).)).................................. ( -17.30, z-score = -1.35, R) >droSec1.super_0 7188958 95 + 21120651 AAAGUUCUUUUGGCACACGCUUGUGGCAGCAUGAAUUUCAUGUUGCUCUGUUUUUAGACCUCUCGUAUUUUUCCUCUUGCUUUCAUUUAAAAUUU ..((.(((...(((((((....)))((((((((.....))))))))..))))...))).)).................................. ( -17.20, z-score = -1.11, R) >droSim1.chr3L 14394343 95 + 22553184 AAAGUUCUUUUGGCACACGCUUGUGGCAGCAUGAUUUUCAUGUUGCUCUGUUUUUAGACCUCUCGUAUUUUUCCUCUAGCUUUCAUUUAAAAUUU ((((((.....((((((....))))((((((((.....))))))))((((....))))..............))...))))))............ ( -17.30, z-score = -1.16, R) >consensus AAAGUUCUUUUGGCACACGCUUGUGGCAGCAUGAUUUUCAUGUUGCUCUGUUUUUAGACCUCUCGUAUUUUUCCUCUUGCUUUCAUUUAAAAUUU ..((.(((...(((((((....)))((((((((.....))))))))..))))...))).)).................................. (-17.23 = -17.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:47 2011