| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,073,451 – 15,073,551 |
| Length | 100 |
| Max. P | 0.715715 |
| Location | 15,073,451 – 15,073,551 |
|---|---|
| Length | 100 |
| Sequences | 9 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 63.73 |
| Shannon entropy | 0.67644 |
| G+C content | 0.52407 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -7.40 |
| Energy contribution | -7.11 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15073451 100 - 24543557 ---UGGGAUGCCGCUAUUUAUACCCAC--------CAGUCAAUGAUCCCCU-UGUGUCGUUGACAGAUGCCU-----CAAUCCUUUCCAGCAG--CUGCCUCAAUCAUCGCCACCUCAC ---((((..((.(((............--------..(((((((((.....-...))))))))).(((....-----..)))......))).)--)...))))................ ( -19.80, z-score = -0.63, R) >droPer1.super_12 1066017 108 + 2414086 UGGGCUGUUUUCUAUUUUAAGGCCCAGUCAGUCGUCAGUCAAUGAUCCCAACCGGAACAUUGACAUGCACGG-----CAAUCCUUCCAG------CUGAUCCGAUCCCCAACAGCCCAU (((((((((...........((..((((..((((((((((((((.(((.....))).))))))).)).))))-----)..........)------)))..)).......))))))))). ( -35.67, z-score = -3.82, R) >dp4.chrXR_group6 12648788 108 + 13314419 UGGGCUGUUUUCUAUUUUAAGGCCCAGUCAGUCGUCAGUCAAUGAUCCCAACCGGAACGUUGACAUGUACGG-----CAAUCCUUCCAG------CUGAUCCGAUCCCCAACAGCCCAU (((((((((...........((..((((..((((((((((((((.(((.....))).))))))).)).))))-----)..........)------)))..)).......))))))))). ( -35.27, z-score = -3.66, R) >droAna3.scaffold_13337 5382971 109 + 23293914 --UGGGGCUGUGUCUAUUUAUACCUGG--------CAGUCAAUGAUCCCCUCCGGAACGUUGACAGACGGCCCAAUCCAAUCCUUUCCAGCAGAGCCCCAUCACUCGCCACUACCUUAC --(((((((.((...........((((--------..(((((((.(((.....))).)))))))....((......))........)))))).)))))))................... ( -31.10, z-score = -1.93, R) >droEre2.scaffold_4784 15031290 99 - 25762168 ---UGGGAUGCCUCUAUUUAUACCCGG--------CAGUCAAUGAUCCCCU-CGUCUCGUUGACAGAUGCCC-----CAAUCCUUUCCAGCAG---CCGCUCAAUCCUCGCUGCCUCAC ---((((.((((.............))--------))((((((((..(...-.)..))))))))......))-----))..........((((---(............)))))..... ( -25.42, z-score = -2.03, R) >droYak2.chr3L 15167936 100 - 24197627 ---UGGGAUGCCUCUAUUUAUACGCAG--------CAGUCAAUGAUCUCCU-CGUGUCGUUGACAGAUGCCU-----CAAUCCUUUCCAGCGGG--CGCCUCAAUCCUCGCUGCCACAC ---.(((....))).........((((--------(.(((((((((.....-...))))))))).((.((((-----(.............)))--.)).)).......)))))..... ( -25.12, z-score = -0.35, R) >droSec1.super_0 7188809 100 - 21120651 ---UGGGAUGCCGCUAUUAAUACCCAC--------CAGUCAAUGAUCCGCU-CGUGUCGUUGACAGAUACCU-----CAAUCCUUUCCAGCAG--CCGCCUCAAUCCUUGCCACCUCAC ---.(((((((.(((............--------..((((((((..(...-.)..)))))))).(((....-----..))).........))--).))....)))))........... ( -20.20, z-score = -1.14, R) >droSim1.chr3L 14394194 100 - 22553184 ---UGGGAUGCCGCUAUUAAUACCCAC--------CAGUCAAUGAUCCCCU-CGUGUCGUUGACAGAUGCCU-----CAAUCCUUUCCAGCAG--CCGCCUCAAUCCUCGUCACCUCAC ---.(((((((.(((............--------..(((((((((.....-...))))))))).(((....-----..))).........))--).))....)))))........... ( -20.00, z-score = -1.08, R) >droGri2.scaffold_15110 10065047 87 + 24565398 --AGCAGAGCUAU-UUUUAAGGCCAA----------AGUCAACGAUCCCCAUC-GAAUGUUGACUUAU---G-----UCAUCCCUUUGC------CUGACACGUCCUCCAGUGAC---- --.((((((.((.-...)).(((..(----------((((((((.((......-)).)))))))))..---)-----))....))))))------....(((........)))..---- ( -19.90, z-score = -1.99, R) >consensus ___UGGGAUGCCUCUAUUAAUACCCAG________CAGUCAAUGAUCCCCU_CGUAUCGUUGACAGAUGCCU_____CAAUCCUUUCCAGCAG__CCGCCUCAAUCCUCGCCACCUCAC .....................................(((((((.............)))))))....................................................... ( -7.40 = -7.11 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:47 2011