Locus 7480

Sequence ID dm3.chr3L
Location 15,072,098 – 15,072,172
Length 74
Max. P 0.788983
window10304

overview

Window 4

Location 15,072,098 – 15,072,172
Length 74
Sequences 5
Columns 74
Reading direction reverse
Mean pairwise identity 90.74
Shannon entropy 0.16422
G+C content 0.31425
Mean single sequence MFE -8.43
Consensus MFE -7.36
Energy contribution -7.56
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.788983
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 15072098 74 - 24543557
UCAAUUUGACUAAACAAACUAAAUUUGUUAAGAGUCCAUCACUCAAAAGUCUACCAAAAAAACGCAGACUAAAU
.......((((.((((((.....))))))..((((.....))))...))))....................... (  -8.90, z-score =  -2.13, R)
>droEre2.scaffold_4784 15029634 73 - 25762168
UCAAAUUGACUAAACAAACUACAUUUGUUAAGCGUCCAUCACUCAAAAGUCG-CCCACAAAACACAGACUAAAU
.......(.((.((((((.....)))))).)))..............((((.-.............)))).... (  -5.74, z-score =  -0.82, R)
>droYak2.chr3L 15166332 73 - 24197627
GCAAAUUGACUAAACAAACUGCAUUUGUUGAGAGUCCAUCACUCAAAAGUCA-UCCAAAAAACACAGACUAAAU
......(((((.((((((.....))))))..((((.....))))...)))))-..................... ( -10.10, z-score =  -1.29, R)
>droSec1.super_0 7187537 73 - 21120651
UCAAUUUGACUAAACAAACUAAAUUUGUUAAGAGUCCAUCAUUCAAAAGUCU-CCCAAAAAACACAGACUAAAU
.......((((.((((((.....))))))...))))...........(((((-............))))).... (  -8.70, z-score =  -2.06, R)
>droSim1.chr3L 14392826 73 - 22553184
UCAAUUUGACUAAACAAACUAAAUUUGUUAAGAGUCCAUCAUUCAAAAGUCU-CUCAAAAAACCCAGACUAAAU
.......((((.((((((.....))))))...))))...........(((((-............))))).... (  -8.70, z-score =  -2.00, R)
>consensus
UCAAUUUGACUAAACAAACUAAAUUUGUUAAGAGUCCAUCACUCAAAAGUCU_CCCAAAAAACACAGACUAAAU
.......((((.((((((.....))))))...))))...........((((...............)))).... ( -7.36 =  -7.56 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:46 2011