| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,276,175 – 5,276,267 |
| Length | 92 |
| Max. P | 0.815418 |
| Location | 5,276,175 – 5,276,267 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 95.65 |
| Shannon entropy | 0.05989 |
| G+C content | 0.49638 |
| Mean single sequence MFE | -12.13 |
| Consensus MFE | -11.50 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5276175 92 - 23011544 UUGUCAACACCCUCACACCCACCGAAUCCCCAACCCAGUCAUUCGGUAUCUAAUCGCACCCUAUGUAGCCGCACAUUUGAUUCGUUCUAUUU ..(((((.............(((((((..(.......)..)))))))........((((.....)).)).......)))))........... ( -9.40, z-score = -0.62, R) >droSim1.chr2L 5078196 92 - 22036055 UUGUCAACACCCCCACACCCACCGAAUCCCCAAUCCAGUCAUUCGGUAUCUAAUCGCACCCUAUGUAGCCGCACCGUUGAUUCGUUCUAUAU ..((((((............(((((((..(.......)..)))))))........((((.....)).))......))))))........... ( -13.40, z-score = -1.88, R) >droSec1.super_5 3355088 92 - 5866729 UUGUCAACACCCCCACACCCACCGAAUCCCCAACCCAGUCAUUCGGUAUCUAAUCGCACCCUUUGUAGCCGCACCGUUGAUUCGUUCUAUAU ..((((((............(((((((..(.......)..)))))))........((...((....))..))...))))))........... ( -13.60, z-score = -2.08, R) >consensus UUGUCAACACCCCCACACCCACCGAAUCCCCAACCCAGUCAUUCGGUAUCUAAUCGCACCCUAUGUAGCCGCACCGUUGAUUCGUUCUAUAU ..((((((............(((((((..(.......)..)))))))........((((.....)).))......))))))........... (-11.50 = -11.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:37 2011