| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,062,892 – 15,063,003 |
| Length | 111 |
| Max. P | 0.507924 |
| Location | 15,062,892 – 15,063,003 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.31 |
| Shannon entropy | 0.64571 |
| G+C content | 0.34549 |
| Mean single sequence MFE | -16.61 |
| Consensus MFE | -9.81 |
| Energy contribution | -8.73 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.21 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15062892 111 + 24543557 CGCUUGUGUGUUAAGUUAGCCACGGCUUCCUUAGAAGUUUCCUGAUACAAAAUAAUAGAAUGAAAUAAGAAAUU-AAAUACACAAAAUGUUAAAGAAGGGAAUAAAGGACUU---- .(((.(((.((((...)))))))))).(((((....(((((((......................(((....))-)...(((.....)))......))))))).)))))...---- ( -16.10, z-score = 0.08, R) >droWil1.scaffold_181009 625025 86 - 3585778 CGCCUGAGUGUUAGAUUGGCCACAGCCUCUUUGGAGAUCUCCUACAACAAAAAAAAAGAA-AAAAUGGUGCA---AAGUUUAUAUGACAC-------------------------- ((((........(((..(((....)))..)))(((....)))..................-.....))))..---..(((.....)))..-------------------------- ( -10.80, z-score = 1.37, R) >droEre2.scaffold_4784 15020394 87 + 25762168 CGCUUGUGCGUUAAGUUGGCCACGGCUUCCUUAGAAGUUUCCUGAAACAAAAUUAUAGAAUGACACAGUGCAC--AAAUUGUGUAACUA--------------------------- (((....)))(((((..(((....)))..)))))..((((....))))..............(((((((....--..))))))).....--------------------------- ( -19.70, z-score = -0.78, R) >droYak2.chr3L 15156970 98 + 24197627 CGCUUGUGUGUUAAGUUGGCCACGGCUUCCUUAGAAGUUUCCUGAAACAAAAUAAUAGAAUGAAAUGAGGAUUAAAUGUGCAUAAGA-GAUAUAUACUU----------------- ..(((((((.(((((..(((....)))..))))).....((((.(....................).))))........))))))).-...........----------------- ( -16.85, z-score = -0.25, R) >droSec1.super_0 7178344 115 + 21120651 CGCUUGUGUGUUAAGUUAGCCACGGCUUCCUUAGAAGUUUCCUGAUGCAAAAUAAAAGAAUGAAAUAAGAAUUUUAAAUACACAAAAUUGUAAA-AAUGGCAUAAAGGACAUACUU .....((((((((((..(((....)))..))))).....((((.((((............((((((....))))))..((((......))))..-....))))..))))))))).. ( -22.80, z-score = -1.66, R) >droSim1.chr3L 14383815 100 + 22553184 CGCUUGUGUGUUAAGUUAGCCACGGCUUCCUUAGAAGUUUCCUGAUACAAAAUAAAAGAAUCAAAUAAGAAUUGUUAA------AAAUGGUAUA-AAAGAAAUACUU--------- (((....)))(((((..(((....)))..)))))..(((((...((((.........((.((......)).)).....------.....)))).-...)))))....--------- ( -13.41, z-score = -0.00, R) >consensus CGCUUGUGUGUUAAGUUAGCCACGGCUUCCUUAGAAGUUUCCUGAAACAAAAUAAAAGAAUGAAAUAAGAAAU__AAAUACACAAAAUGGUA_A_AA_G_________________ (((....)))(((((..(((....)))..))))).................................................................................. ( -9.81 = -8.73 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:45 2011