| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,036,800 – 15,036,898 |
| Length | 98 |
| Max. P | 0.599249 |
| Location | 15,036,800 – 15,036,898 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 63.73 |
| Shannon entropy | 0.72975 |
| G+C content | 0.61388 |
| Mean single sequence MFE | -42.85 |
| Consensus MFE | -17.50 |
| Energy contribution | -16.66 |
| Covariance contribution | -0.85 |
| Combinations/Pair | 1.53 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15036800 98 + 24543557 UAGCUGGCCGGGUAAGGAAGCAUGGGU-AUCGAUGGUAACAUGGCAGCUGCGGCCACUGCAGCAGCGGCUGUA--GGACUUCCUCCUGGCGAUCCCAGUUU---------------- .(((((((((((..((((((((((..(-((.....))).))))....((((((((.(((...))).)))))))--)..)))))))))))).....))))).---------------- ( -41.00, z-score = -1.15, R) >droSim1.chr3L 14357922 98 + 22553184 UAGCUGGCCGGGUAAGGAAGCAUCGGU-AUCGAUGGUAACAUGGCAGCUGCGGCCACUGCAGCAGCGGCUAUA--GGACUUCCUCCUGGUGAUCCCAGUUU---------------- .(((((((((((..(((((((((((..-..))))).....(((((.(((((.((....)).))))).))))).--...))))))))))).....)))))).---------------- ( -42.30, z-score = -2.22, R) >droSec1.super_0 7153399 98 + 21120651 UAGCUGGCCGGGUAAGGAAGCAUCGGU-AUCGAUGGUAACAUGGCAGCUGCGGCCACUGCAGCAGCGGCUGUA--GGACUUCCUCCUGGUGAUCCCAGUUU---------------- .(((((((((((..(((((((((((..-..)))))............((((((((.(((...))).)))))))--)..))))))))))).....)))))).---------------- ( -41.60, z-score = -1.75, R) >droYak2.chr3L 15129028 98 + 24197627 UAGCUGGCCGGAUAGGGCAGCAUUGGU-AUCGACGGUAACAUGGCAGCUGCGGCCACUGCAGCAGCAGCCGCA--GGACUUCCUCCUGGCGAUCCCAGCUU---------------- ..((((.((.....)).)))).((((.-((((.(........(((.(((((.((....)).))))).))).((--(((.....)))))))))).))))...---------------- ( -41.80, z-score = -1.05, R) >droEre2.scaffold_4784 14993223 98 + 25762168 UAGCUGGCCGGAUAAGGCAGCAUCGGU-AUCGAUGGCAACAUGGCAGCGGCGGCCACCGCAGCAGCAGCCGCA--GGACUUCCUCCUGGCGAUCCCAGUUU---------------- ..((((.((......))))))...((.-(((((((....)))(((.((.((((...))))....)).))).((--(((.....))))).)))).)).....---------------- ( -37.70, z-score = -0.27, R) >droAna3.scaffold_13337 5345018 98 - 23293914 UAGCUGGCCGGAUAAGGUAACAUCGGA-AUUGAAGGCAACAUGGCAGCUGCGGCCACUGCAGCAGCCGUCGAG--GAUCCUCCGCCCGGUGAUCCCAGGGU---------------- ...((((((......))...((((((.-......(....)..(((.(((((((...))))))).)))((.(((--....))).))))))))...))))...---------------- ( -36.30, z-score = -0.26, R) >dp4.chrXR_group6 12615564 101 - 13314419 UAGCUGGCCGGAUAUGGCAGAAUUGGG-AUGGUGGGCAACAUGGCUGCUGCGGCCACCGCGGCGGCUGCUGCACUGGCUCCUUGGCUAGCGG-AGCUGGAAGG-------------- ..(((.((((..((.........))..-.)))).))).....(((((((((((...)))))))))))(((.(.((((((....)))))).).-))).......-------------- ( -42.10, z-score = -0.01, R) >droPer1.super_12 1032664 103 - 2414086 UAGCUGGCCGGAUAUGGCAGAAAUGGGGAUGGUGGGCAACAUGGCUGCUGCGGCCACCGCGGCGGCUGCUGCACUGGCUCCUUGGCUAGCGGGAGCUGGAAGG-------------- ..(((.((((..(....((....)).)..)))).))).....(((((((((((...)))))))))))......(..((((((........))))))..)....-------------- ( -44.70, z-score = -0.52, R) >droWil1.scaffold_180698 5117498 101 - 11422946 UAGCUAGCUGGAUACGGUAGCAUGGGA-AUAGUUGGUAACAUGGCUGCUGCAGCCACUGCAGCGGCAGCUGCUGCACUGGCUCCACCGGCAACCACUGAGGU--------------- ......(((((...((((((((((..(-........)..))).))))))).(((((.((((((((...)))))))).)))))...))))).(((.....)))--------------- ( -40.80, z-score = -0.30, R) >droVir3.scaffold_13049 17652754 107 + 25233164 UAACUGGCUGGAUACGGCAACAUGGGC-AGGCCGGGCAGCAUGGCCGCUGCAGCGGCUGUGGCAGCCACGGCGGCAGCUGUUGCAUUGGCAGUGGG---------UGAGCCGAGUGG ......((((....))))..(((.(((-..(((((((.((((((((((....)))))))).)).))).))))..((.(..((((....))))..).---------)).)))..))). ( -51.90, z-score = -1.07, R) >droMoj3.scaffold_6680 22699844 116 + 24764193 UAACUAGCUGGAUAUGGCAGCAUGGGU-AUCCCUGGCAGCAUUGCUGCUGCAGCAGCUGAGGCGGCCACAACUGCCGCCGUUGCAUUGACAGUGGGGUCAAUGGGCGACCCAAGUGG ..(((.((((.......)))).(((((-..(((..(((((...(((((....)))))...((((((.......)))))))))))((((((......)))))))))..)))))))).. ( -52.30, z-score = -1.59, R) >droGri2.scaffold_15110 10037976 107 - 24565398 UAGCUAGCUGGAUAUGGUAACAUUGGU-AUGCCCGGUAGCAUUGCAGCUGCUGCAGCUGUGGCAGCCACGGCGGCGGCGGUAACAUUGGCCGUGGG---------UGAUCCAAGUGG ..((((........))))..((((((.-..(((((...((..((..((((((((.(((((((...))))))).))))))))..))...))..))))---------)...)).)))). ( -41.70, z-score = 0.42, R) >consensus UAGCUGGCCGGAUAAGGCAGCAUCGGU_AUCGAUGGCAACAUGGCAGCUGCGGCCACUGCAGCAGCCGCUGCA__GGACUUCCUCCUGGCGAUCCCAGUUU________________ ......(((((.......................(....)...((.(((((((...))))))).))...................)))))........................... (-17.50 = -16.66 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:43 2011