| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,026,566 – 15,026,651 |
| Length | 85 |
| Max. P | 0.700381 |
| Location | 15,026,566 – 15,026,651 |
|---|---|
| Length | 85 |
| Sequences | 9 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 70.62 |
| Shannon entropy | 0.55203 |
| G+C content | 0.39668 |
| Mean single sequence MFE | -16.02 |
| Consensus MFE | -7.62 |
| Energy contribution | -8.42 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15026566 85 + 24543557 GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUUGCCAUCAGAUACAAGCCCCACCUUAAUCCAU------------------ ...((((.(((((((((((.....)))))))........(((.((.(((....))).)).)))........)))).)))).....------------------ ( -16.40, z-score = -1.40, R) >droPer1.super_12 1024092 102 - 2414086 GCUCUGACGUUUGGAAUUUAAUCGAAAUUCCAAACAUUUUCAAAUUAAAAUUUGGCCAAGAUAUAUGUA-CACAUCCCAACCCUCAUCAUACCUUCUAUCUAG ((......(((((((((((.....))))))))))).....(((((....)))))))..(((((((((..-.................)))).....))))).. ( -15.71, z-score = -2.49, R) >dp4.chrXR_group6 12606975 102 - 13314419 GCUCUGACGUUUGGAAUUUAAUCGAAAUUCCAAACAUUUUCAAAUUGAAAUUUGGCCAAGAUAUAUGUA-CACAUCCCAACCCUCAUCAUACCUUCUAUCUAG (((.....(((((((((((.....)))))))))))..((((.....))))...)))..(((((((((..-.................)))).....))))).. ( -16.01, z-score = -1.93, R) >droAna3.scaffold_13337 5335095 78 - 23293914 GCGUUGACGUGGGGAAUUUAAUCGAAAUUCCACACAUUUUUAAAUUGCGAUUUGGCCAACAGAUA--AGGCCCACAUCAG----------------------- (((....)(((.(((((((.....))))))).)))...........))(((..((((........--.))))...)))..----------------------- ( -18.50, z-score = -1.67, R) >droEre2.scaffold_4784 14982088 85 + 25762168 GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUGGCCAUCAGAUAGGAGCCCCACCUUAAUCCAU------------------ ...((((.((((((..(((((((...........)))..(((.((.((......)).)).)))))))..)))))).)))).....------------------ ( -16.30, z-score = 0.15, R) >droYak2.chr3L 15118552 85 + 24197627 GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUGGCCAUCAGAUACGAGCCCCACCUCAAUCCAU------------------ ...((((.(((((((((((.....)))))))......................(((..((......))))))))).)))).....------------------ ( -18.00, z-score = -0.96, R) >droSec1.super_0 7143490 85 + 21120651 GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUGGCCAUCAGAUACGAGCCCCACCUCAAUCCAU------------------ ...((((.(((((((((((.....)))))))......................(((..((......))))))))).)))).....------------------ ( -18.00, z-score = -0.96, R) >droSim1.chr3L 14347847 85 + 22553184 GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUGGCCAUCAGAUACGAGCCCCACCUUAAUCCAU------------------ ...((((.(((((((((((.....)))))))......................(((..((......))))))))).)))).....------------------ ( -15.80, z-score = -0.32, R) >droMoj3.scaffold_6680 16287063 81 - 24764193 GCUCAAAAAUUUGAAAUACAA---AUGUUACAUAAAUUGUCAAAUCA-AUUUCAGUAAAUUGAUGCCAAACCGCCCUCAACCCCU------------------ ((((((..(((((.....)))---)).((((..((((((......))-))))..)))).)))).))...................------------------ ( -9.50, z-score = -2.24, R) >consensus GCCUUGACGUGGGGAAUUUAAUCGAAAUUCCACAGAUAUUCUAAUUGCAAUUUGGCCAUCAGAUACGAGCCCCACCUCAAUCCAU__________________ ....(((.(((((((((((.....)))))))..................(((((.....))))).......)))).)))........................ ( -7.62 = -8.42 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:39 2011