Locus 7473

Sequence ID dm3.chr3L
Location 15,017,876 – 15,017,942
Length 66
Max. P 0.539526
window10293

overview

Window 3

Location 15,017,876 – 15,017,942
Length 66
Sequences 6
Columns 66
Reading direction forward
Mean pairwise identity 78.00
Shannon entropy 0.40785
G+C content 0.41322
Mean single sequence MFE -11.15
Consensus MFE -10.74
Energy contribution -9.97
Covariance contribution -0.77
Combinations/Pair 1.67
Mean z-score -0.26
Structure conservation index 0.96
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.09
SVM RNA-class probability 0.539526
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr3L 15017876 66 + 24543557
UUAAGCCGGUACUGCUCGUGCUCCAGCUGCUGGUUUUUUUUUUUUUUAUUGUAUGCACAAAUAUCC
..(((((((((..(((.(....).))))))))))))............((((....))))...... ( -11.60, z-score =  -0.49, R)
>droSim1.chr3L 14339042 61 + 22553184
UUAAGCCGGCACUGCUCGUGCUCCAGCUGCUGGUUUUUUUUU-----AUUGUAUGCACAAAUAUCC
..(((((((((..(((.(....).))))))))))))......-----.((((....))))...... ( -13.60, z-score =  -0.80, R)
>droSec1.super_0 7134626 59 + 21120651
UUAAGCCGGCACUGCUCGUGCUCCAGCUGCUGGUUUUUUU-------AUUGUAUGCACAAAUAUCC
..(((((((((..(((.(....).))))))))))))....-------.((((....))))...... ( -13.60, z-score =  -0.73, R)
>droYak2.chr3L 15108967 58 + 24197627
UUAAGCCCGCACUGCUCGUGCUUCAGCUGCUGGUUUUUU--------AUUGUAUGCACAAAUAUCC
..(((((.((((((.........))).))).)))))...--------.((((....))))...... (  -9.40, z-score =   0.50, R)
>droEre2.scaffold_4784 14973717 57 + 25762168
UUAAGCCGGCACUGCUCGUGCUCCAGCUGCUGGUUUUU---------AUUGUAUGCACAAAUAUCC
..(((((((((..(((.(....).))))))))))))..---------.((((....))))...... ( -13.60, z-score =  -0.68, R)
>droAna3.scaffold_13337 5327074 57 - 23293914
------AAGAGCAGCUGUUAUUCUUGUCUUUUUUUUUUUGCA---UUAUUUUAUGCACAAAUAUUC
------((((((((.........))).)))))..(((.((((---(......))))).)))..... (  -5.10, z-score =   0.64, R)
>consensus
UUAAGCCGGCACUGCUCGUGCUCCAGCUGCUGGUUUUUUU_______AUUGUAUGCACAAAUAUCC
..((((((((((((.........))).))))))))).............................. (-10.74 =  -9.97 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:37 2011