| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,009,848 – 15,009,902 |
| Length | 54 |
| Max. P | 0.670780 |
| Location | 15,009,848 – 15,009,902 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 62.37 |
| Shannon entropy | 0.68149 |
| G+C content | 0.56420 |
| Mean single sequence MFE | -15.15 |
| Consensus MFE | -9.18 |
| Energy contribution | -9.13 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.92 |
| Mean z-score | -0.17 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15009848 54 - 24543557 ----CCACGUGGACCAGGCCAUAAAC---CGGUGGUCUGCGCCGCUUUUAACAGCUCCGGC ----....((((.(((((((((....---..)))))))).)))))................ ( -18.00, z-score = -0.72, R) >droSec1.super_0 7126542 54 - 21120651 ----CCACGUGGACCAGGCCAUAAAC---CGGUGGUCUGCGCCGCUUUUAACAGCUCCGGC ----....((((.(((((((((....---..)))))))).)))))................ ( -18.00, z-score = -0.72, R) >droYak2.chr3L 15100614 57 - 24197627 ----CCACGUGGACUUGGCCAUAAACCGGCGGUGGUCUGCGCCGCUUUUAACAGCUACGGC ----...(((((.((.((.......))(((((((.....)))))))......))))))).. ( -17.50, z-score = 0.08, R) >droEre2.scaffold_4784 14966616 53 - 25762168 ----CCACGUGGACCAGGCCAUAAAC---CGAAGGUCUGCGCCGC-UUUAACAGCUCCGGC ----((.((..((((.((.......)---)...))))..))..((-(.....)))...)). ( -15.10, z-score = -0.41, R) >droAna3.scaffold_13337 5320900 57 + 23293914 CGGCUUUGGCCGUUUUGGCCAUUAAC---CGUUGGCAGCCGCCGUUUUUAACAGC-CGGAC (((((.(((((.....))))).....---....(((....))).........)))-))... ( -20.00, z-score = -1.22, R) >triCas2.ChLG4 3356040 58 - 13894384 UGAGUUUAAUCAGUUUUUAAGUUAAU---UAAUUUUUUACGGAGUUGCCAACGUCACUAGC ((.((....((.((....(((((...---.)))))...)).))...))))........... ( -2.30, z-score = 1.94, R) >consensus ____CCACGUGGACCAGGCCAUAAAC___CGGUGGUCUGCGCCGCUUUUAACAGCUCCGGC ........((((..((((((((.........))))))))..))))................ ( -9.18 = -9.13 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:35 2011