| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,006,736 – 15,006,848 |
| Length | 112 |
| Max. P | 0.561246 |
| Location | 15,006,736 – 15,006,848 |
|---|---|
| Length | 112 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Shannon entropy | 0.46945 |
| G+C content | 0.43310 |
| Mean single sequence MFE | -27.96 |
| Consensus MFE | -13.43 |
| Energy contribution | -14.83 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15006736 112 - 24543557 AUGAAUGUAUGU---ACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGCAAAGUGGCGCUAUUUUCUGUUUGAUGCA----UAUUGUUCUCCCAUUGCAAUCAAAACGGAGU ..((.(((((..---..)))))..)).....(((.(..(((((((........)))))))..))))....((((((((((((((----...((......)).))).))).)))))))). ( -30.50, z-score = -1.71, R) >droPer1.super_12 1000917 98 + 2414086 ------------------UUCGACUCCUUGGAUGAUUCCUCUGGAU---GAUAACAAAAGUAGCGCCAUUUGUGGUGUUCUGCAAAUGCAUUGUGCUCAAACUGCAAUCAAAACGGAAU ------------------((((..(((..(((....)))...)))(---(((..((.....(((((((((((..(....)..))))))....))))).....))..))))...)))).. ( -24.40, z-score = -1.28, R) >droAna3.scaffold_13337 7186073 95 + 23293914 ---------------AUUUCCGUUUGCUUUGACGGCUCCUUUGAAU-CCUUUUUGCAAAGUGGCGCCAUUUCCUGU---GUUCC----UG-UAUUUUCUCGUUGCAAUCAAAGCUCCGU ---------------.....((...(((((((.((((((((((((.-.....)).))))).)).))).........---.....----((-((.........)))).)))))))..)). ( -19.10, z-score = -1.41, R) >droEre2.scaffold_4784 14963737 108 - 25762168 ----AUGCAUGU---ACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGCAAAGUGGCGCUAUUUUCUGUUUGAUGCA----UAUUGUUCUCCCAUUGCAAUCAAAACGGAGU ----.(((((..---..))))).........(((.(..(((((((........)))))))..))))....((((((((((((((----...((......)).))).))).)))))))). ( -31.80, z-score = -2.18, R) >droYak2.chr3L 15097352 108 - 24197627 ----AUGAAUGU---ACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGCAAAGUGGCGCUAUUUUCUGUUUGAUGCA----UAUUGUUCUUCCAUUGCAAUCAAAACGGAGU ----........---...((((((....))))))((..(((((((........)))))))..))......((((((((((((((----...((......)).))).))).)))))))). ( -29.10, z-score = -1.56, R) >droSec1.super_0 7123565 115 - 21120651 UUGAAUGUGUGUACGACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGUAAAGUGGCGCUAUUUUCUGUUUGAUGCA----UAUUGUUCUCCCAUUGCAAUCAAAACGGAGU ..((.((..((.....))..))..)).....(((.(..(((((((........)))))))..))))....((((((((((((((----...((......)).))).))).)))))))). ( -29.20, z-score = -1.03, R) >droSim1.chr3L 14324984 112 - 22553184 AUGAAUGUGUGU---ACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGCAAAGUGGCGCUAUUUUCUGUUUGAUGCA----UAUUGUUCUCCCAUUGCAAUCAAAACGGAGU ...(((((((((---.((.(((((.......(((.(..(((((((........)))))))..)))).....))))).)))))))----))))...((((..(((....)))...)))). ( -31.60, z-score = -1.86, R) >consensus ____AUGUAUGU___ACGUGCAGGUCCUUUUGCGGCUCCUUUGCAUCCCUUUUUGCAAAGUGGCGCUAUUUUCUGUUUGAUGCA____UAUUGUUCUCCCAUUGCAAUCAAAACGGAGU ...............................(((.(..(((((((........)))))))..))))....((((((((..((((..................))))....)))))))). (-13.43 = -14.83 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:34 2011