| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,273,126 – 5,273,299 |
| Length | 173 |
| Max. P | 0.559319 |
| Location | 5,273,126 – 5,273,299 |
|---|---|
| Length | 173 |
| Sequences | 13 |
| Columns | 177 |
| Reading direction | forward |
| Mean pairwise identity | 74.56 |
| Shannon entropy | 0.57958 |
| G+C content | 0.51233 |
| Mean single sequence MFE | -48.22 |
| Consensus MFE | -21.93 |
| Energy contribution | -21.98 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5273126 173 + 23011544 AUAUGUUCCCUGAUCAACAAAGUCUAUGGCUC----ACCGCAUAGGCCUUCUCGAGCACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAGACCGUCCCGCUGCAGACUCAGAUCCUUGAUUUGCUCCUUGAGGGAGAGCUCGAAGAACUUAAGGCGCUUCAGUUCCUCC ......(((((.(......(((((...((.((----...(((.(((((..((((....))))..).))))..))).....(((((((.....(((......)))..))))))).....)).))..)))))......).)))))(((((.((((..(.....)..))))))))).... ( -49.10, z-score = 0.73, R) >droSim1.chr2L 5075175 173 + 22036055 AUAGGUUCUCUGAUUUACAAAAUCCAUCGCUC----ACCGCAUAGGCCUUCUCGAGCACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAGACCGUCUCGCUGCAGACUCAGAUCCUUGAUCUGCUCCUUGAGGGACAGCUCGAAGAACUUAAGGCGCUUCAGUUCCUCC ..(((....((((...............((..----...))....((((((((((((...(((((.(....(((((.....)))))...).))))).....(((((.(.(((((.((((....))))))))).....).))))).))))).))).....))))...))))..))).. ( -50.10, z-score = 0.02, R) >droSec1.super_5 3352077 177 + 5866729 AUAUGUUCUCUGAUUUACAAAAUCCAUCGCUCGCUCACCGCAUAGGCCUUCUCGAGCACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAGACCGUCCCGCUGCAGGCUCAGAUCCUUGAUUUGCUCCUUGAGGGACAGCUCAAAGAACUUAAGGCGCUUCAGUUCCUCC .........((((........((((...(((((....((.....))......)))))..)))).((((((..((((.....))))((((..(((...(.(.(((((.(...(((..((((((...))))))..))).).))))).)))))..))))...)))))).))))....... ( -47.50, z-score = 0.63, R) >droYak2.chr2L 8399156 173 - 22324452 AAAUAUUCUCCGAUAAACAAAAUCCACGGCUC----ACCGCAUAGGCCUUCUCGAGAACUGGUCGCGCCUCCUGCAAUUGCUGCAGUUCCAUGACCAGACCGUCCCGCUGCAGGCUCAAGUCCUUGAUCUGCUCCUUGAGCGACAGCUCGAAGAACUUAAGGCGCUUCAGUUCCUCC ...........................((((.----........)))).....(((((((((..((((((...(((....(((((((.....(((......)))..)))))))..((((....))))..)))((.((((((....)))))).)).....)))))).)))))).))). ( -48.60, z-score = -0.89, R) >droEre2.scaffold_4929 5353210 173 + 26641161 AAAUAUGCCUCGAUAAACAAAAUCCACUGCUC----ACCGCAUAUGCCUUCUCGAGAACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAGACCGUCCCGCUGCAGGCUCAAAUCCUUGAUCUGCUCCUUGAGCGACAGCUCGAAGAACUUAAGGCGCUUCAGUUCCUCC ..((((((...((.................))----...))))))........((((((..(..((((((...(((....(((((((.....(((......)))..)))))))..((((....))))..)))((.((((((....)))))).)).....))))))..).))).))). ( -42.93, z-score = 0.03, R) >droAna3.scaffold_12916 6287085 173 - 16180835 ----AUUUAUGGGAAAUAGAGUGUCGUGUCCAACUCACCGCAUAGGCCUUCUCUAAUACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAAACCGUCGCGUUGCAGGCUCAAGUCCUUGAUCUGCUCCUUGAGCGACAGCUCGAAGAACUUGAGGCGCUUCAGCUCCUCC ----......((((....((((..........))))...((...(((((..........)))))(((((.((((((((.((.((.(((.........))).)).)))))))))).((((((...........((.((((((....)))))).)))))))))))))....)))))).. ( -53.90, z-score = -0.55, R) >dp4.chr4_group3 7071756 174 + 11692001 GUUUAUCCUUUGGUUACCCCGCUCCAAUGGCU---CACCGCAUAGGCCUUCUCGAGUACAGGUCUCGCCUCCUGCAACUGUUGCAGUUCCAUGACCAAACCGUCACGUUGCAGGCUCAAAUCCUUGAUCUGCUCCUUCAGCGACAGCUCAAAGAACUUGAGGCGCUUCAGCUCCUCC .......((((((.......((((....((((---.........)))).....)))).((((........))))...(((((((.......((((......)))).(..(((((.((((....)))))))))..)....))))))).)))))).....((((.((....)).)))). ( -46.00, z-score = -0.60, R) >droPer1.super_1 8524144 174 + 10282868 GUUUAUCCUUUGGUUACCCCGCUCCAAUGGCU---CACCGCAUAGGCCUUCUCGAGCACAGGUCUCGCCUCCUGCAACUGUUGCAGUUCCAUGACCAAACCGUCACGUUGCAGGCUCAAAUCCUUGAUCUGCUCCUUCAGCGACAGCUCAAAGAACUUGAGGCGCUUCAGUUCCUCC .......((((((.......((((....((((---.........)))).....)))).((((........))))...(((((((.......((((......)))).(..(((((.((((....)))))))))..)....))))))).)))))).....((((.((....)).)))). ( -46.40, z-score = -0.66, R) >droWil1.scaffold_180772 612464 168 - 8906247 ------AAUUGGAAUUUUGUAACCAGCCAACU---UACCGCAUAGGCCUUUUCAAGUACUGGACGCGCCUCCUGCAACUGUUGCAGUUCCAUGACCAAACCGUCACGUUGCAGGCUCAAAUCUUUGAUGUGUUCCUUUAGUGACAAUUCAAAGAAUUUAAGGCGUUUCAGUUCCUCC ------....(((..((((......(((....---.........))).....)))).((((((.((((((((((((((.((.((.(((.........))).)).))))))))))......(((((((..(((..(....)..)))..))))))).....)))))))))))))))... ( -45.72, z-score = -2.20, R) >droVir3.scaffold_12963 14395722 158 + 20206255 ----------------UUAUUAUCAACGAUCU---UACCGCAUAUGCUUUCUGAAGAACAGGACGUGCUUCCUGCAACUGUUGCAAUUCCAUGACCAAACCGUCACGUUGCAGACUCAGAUCCUUUAUCUGCUCCUUGAGUGAAAGCUCAAAGAACUUAAGACGUUUCAGUUCCUCC ----------------........((((.(((---((..(((.(((...(((((..(((((....(((.....))).)))))(((((....((((......)))).)))))....))))).....))).)))((.((((((....)))))).))...)))))))))........... ( -38.20, z-score = -2.01, R) >droMoj3.scaffold_6500 15345299 171 + 32352404 ---UUGCAAUCGACAAUAAUCGGCAUUAUAUU---UACCGCAUAUGCCUUCUCGAGAACGGGACGUGCUUCCUGCAACUGUUGCAGUUCCAUGACUAAACCGUCACGUUGCAGGCUCAAAUCCUUGAUCUGCUCCUUGAGCGAAAGCUCAAAGAACUUGAGACGCUUUAAUUCCUCC ---..((..............(((((......---........))))).(((((((((((((((.(((.....((....)).)))))))).((((......)))).)))(((((.((((....)))))))))((.((((((....)))))).)).))))))).))............ ( -49.84, z-score = -3.07, R) >droGri2.scaffold_15126 6849674 158 - 8399593 ----------------UGAUUAAUUAUGGUCU---UACCGCAUAGGCCUUCUCGAGAACUGGACGCGCUUCCUGCAACUGUUGCAGUUCCAUUACUAAACCAUCACGUUGCAGGCUCAAAUCCUUGAUCUGCUCUCUGAGUGAGAGCUCAAAGAAUUUGAGGCGCUUCAGUUCUUCC ----------------...........(((((---........))))).....((((((((((.((((..((((((((((.((.(((......)))....)).)).))))))))(((((((.(((.....((((((.....))))))...))).))))))))))))))))))))).. ( -59.00, z-score = -5.05, R) >anoGam1.chr3R 2515304 154 + 53272125 ------------------AUGUGAAGCCGUCU-----UGGCGUAGGAUCUGGCCAAUACCGACUUGGCCUCUUUCAGCUGCUGCAGCUCCAUCAUCAGACAAUCACGCUCAUGCGUAAGGUCUUUAAUUUCAUCCUGCAGCUGUAGCUGCAUCAACCGCAGAUGCUUCGUUUGCACC ------------------....(((((.((((-----..(((..(((...((((((.......))))))...))).((.(((((((((.((.....((((....((((....))))...))))............)).))))))))).))......))))))))))))......... ( -49.53, z-score = -1.55, R) >consensus ___UAUUCUUUGAUUAACAAAAUCCAUGGCCU____ACCGCAUAGGCCUUCUCGAGAACGGGUCGCGCCUCCUGCAACUGCUGCAGUUCCAUGACCAAACCGUCACGUUGCAGGCUCAAAUCCUUGAUCUGCUCCUUGAGCGACAGCUCAAAGAACUUAAGGCGCUUCAGUUCCUCC .......................................(((...((...((........))....))....)))(((((..((........(((......)))..((((((((.((((....)))))))))((.((((((....)))))).))......)))))..)))))..... (-21.93 = -21.98 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:18:36 2011