| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,006,222 – 15,006,325 |
| Length | 103 |
| Max. P | 0.948920 |
| Location | 15,006,222 – 15,006,325 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 65.27 |
| Shannon entropy | 0.59461 |
| G+C content | 0.59339 |
| Mean single sequence MFE | -38.38 |
| Consensus MFE | -21.12 |
| Energy contribution | -21.28 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.948920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15006222 103 - 24543557 -----UCCUGGUCCACUUUGGAUCACGGCGUCUUUGAGGGGAUGGCCCGGGGGCUGGGGGCUGGUGACUGGAG-GCU---GAUGACUGGGCGCUGUGGGCGAAGGGAUAUAG -----.....((((.(((((..(((((((((((...((..(.((((((((..((..(...)..))..)))..)-)))---).)..))))))))))))).))))))))).... ( -39.90, z-score = -1.03, R) >droSim1.chr3L 14324468 96 - 22553184 -----UCCUGGUCCACUUUGGAUCACGGCGUCUUUGAGGGGAUGGCCCGGGGGCUGGG-------GUCUGGGG-GCU---GGUGACUAGGCGCUGUGGGCGAAGGGACAUAG -----.....((((.(((((..(((((((((((...((....((((((..((((....-------))))..))-)))---)....))))))))))))).))))))))).... ( -44.50, z-score = -2.50, R) >droSec1.super_0 7123056 89 - 21120651 -----UCCUGGUCCACUUUGGAUCACGGCGUCUUUGAGGGGAUGGCCCAGGGG--------------CUGGGG-GCU---GGUGACUUGGCGCUGUGGGCGAAGGGACAUAG -----.....((((.(((((..((((((((((...(((....((((((.....--------------....))-)))---)....))))))))))))).))))))))).... ( -38.00, z-score = -1.60, R) >droYak2.chr3L 15096719 107 - 24197627 -----UCCUGGUCCACUUUGGAUCACGGCGUCUUUGAGGCGAUGGCCCGGGGGUUGGGGGCCGGAGACUGGGGUGCUUUGGAUGCAGGGGAACUGUGGGCGAAGGGACAUAG -----(((((((((.....)))))...((((((..((((((..(((((.........)))))(....).....))))))))))))..)))).(((((..(....)..))))) ( -41.90, z-score = -1.03, R) >droWil1.scaffold_181136 2025753 99 + 2313701 CAUCAUCUUUGCAGUCUUUGCAUAAGUGCAUACAUGCAUGUAUGUACAUAUGUCUGCAG----AAGUAUGUGA-GUG---GGUGUGUUUAUGUGUGCGGUAAAAAGA----- .....(((((((((...))))...(.(((((((((((((.(((.(((((((.((....)----).))))))).-)))---.))))....))))))))).)..)))))----- ( -27.60, z-score = -0.66, R) >consensus _____UCCUGGUCCACUUUGGAUCACGGCGUCUUUGAGGGGAUGGCCCGGGGGCUGGGG______GACUGGGG_GCU___GGUGACUGGGCGCUGUGGGCGAAGGGACAUAG ..........((((.(((((..(((((((((((..........(((((.((................)).))..)))..........))))))))))).))))))))).... (-21.12 = -21.28 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:33 2011