| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,004,787 – 15,004,839 |
| Length | 52 |
| Max. P | 0.759119 |
| Location | 15,004,787 – 15,004,839 |
|---|---|
| Length | 52 |
| Sequences | 7 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 78.38 |
| Shannon entropy | 0.43276 |
| G+C content | 0.49134 |
| Mean single sequence MFE | -10.46 |
| Consensus MFE | -8.48 |
| Energy contribution | -8.24 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.759119 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15004787 52 + 24543557 CACACAUGGCCAAUUGGCAUCC--GUUCGAUAAGCG-ACCGCUUACGCACUACUU ........(((....)))....--((.((.(((((.-...))))))).))..... ( -12.10, z-score = -1.73, R) >droAna3.scaffold_13337 7184297 50 - 23293914 --AGCAUGGCCAAU-GGCAUCC--GUUUGAUAAGCGUACGGCUUACGGACCACUU --......(((...-)))....--(((((.(((((.....))))))))))..... ( -11.30, z-score = 0.05, R) >droEre2.scaffold_4784 14961553 52 + 25762168 UACACAUGGCCAAUUGGCAUCC--GUUCGAUAAGCG-AGCGCUUACGCACAACUU ........(((....)))....--((.((.(((((.-...))))))).))..... ( -12.60, z-score = -1.37, R) >droYak2.chr3L 15095101 51 + 24197627 CACACAUGGCCAAUUGGCAUCC--GUUCGAUAAGCG-AC-GCUUACGCACUACUU ........(((....)))....--((.((.(((((.-..-))))))).))..... ( -10.00, z-score = -0.89, R) >droSec1.super_0 7121655 52 + 21120651 CACACAUGGCCAAUUGGCAUCC--GUUCGAUAAGCG-ACCGCUUACGCACUACUU ........(((....)))....--((.((.(((((.-...))))))).))..... ( -12.10, z-score = -1.73, R) >droSim1.chr3L 14323055 52 + 22553184 CACACAUGGCCAAUUGGCAUCC--GUUCGAUAAGCG-ACCGCUUACGCACUACUU ........(((....)))....--((.((.(((((.-...))))))).))..... ( -12.10, z-score = -1.73, R) >droGri2.scaffold_15110 14450996 54 + 24565398 UGACUAUGGCCAGAGAGUGACGUAAUUUGUUUACCG-AACAUUGAUAUACAAAUU .......................(((((((.((.((-(...))).)).))))))) ( -3.00, z-score = 1.35, R) >consensus CACACAUGGCCAAUUGGCAUCC__GUUCGAUAAGCG_ACCGCUUACGCACUACUU ........(((....)))......((.((.(((((.....))))))).))..... ( -8.48 = -8.24 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:33 2011