| Sequence ID | dm3.chr3L |
|---|---|
| Location | 15,001,255 – 15,001,347 |
| Length | 92 |
| Max. P | 0.770066 |
| Location | 15,001,255 – 15,001,347 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 75.31 |
| Shannon entropy | 0.42707 |
| G+C content | 0.51436 |
| Mean single sequence MFE | -30.54 |
| Consensus MFE | -17.36 |
| Energy contribution | -18.56 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 15001255 92 + 24543557 CUGUCAAAGGAGCGGAUUGCACGCAG----AUUCGCUUGAUGCCCGAUUCCUGAUUC-------CCGCUUGUGAUCAUGACCAUGAUCAUGAUCGCCACAUGU .......((((((((....((.((..----....)).))....))).))))).....-------......((((((((((......))))))))))....... ( -25.60, z-score = -0.30, R) >droEre2.scaffold_4784 14958001 87 + 25762168 ---------CCGCCAGUGGCUCGCCAAAGGAGCGGGUUGAUUCCUGAUUCCCGAUUC-------CCGAUCGUGGUCAUGGCCACGAUCAUGAUCGCCACAUGU ---------......(((((........((((((((......)))).)))).((((.-------..(((((((((....)))))))))..))))))))).... ( -37.00, z-score = -2.71, R) >droYak2.chr3L 15091424 101 + 24197627 CUGCC-AGUUAUCUGGUU-CCCCAAGUCAGAUUCGCUUGAUGCCCCAUUCCUGAUUCGUGAAUCCUGAUCAUGGUCAUGACCAUGAUCAUGAUCGCCACAUGU ..(((-((....))))).-.....((((((....((.....)).......)))))).((((.((.((((((((((....)))))))))).))))))....... ( -30.30, z-score = -2.23, R) >droSec1.super_0 7118086 96 + 21120651 AUGCCAAAGGAGCGGAUUGCACUCAGUCAGAUUCGCUUGAUGCCCGAUUCCUGAUUC-------CCGAUUGUGAUCAUGACCAUGAUCAUGAUCGCCACAUGU .......((((((((...(((.((((.(......).)))))))))).))))).....-------.((((..(((((((....)))))))..))))........ ( -28.90, z-score = -1.21, R) >droSim1.chr3L 14319092 90 + 22553184 ------AAGGAGCGGGUUGCACUCAGUCAGAUUCGCUUGAUGCCCGAUUCCUGAUUC-------CCGAUUGUGAUCAUGACCAUGAUCAUGAUCGCCACAUGU ------.((((((((((........(((((......)))))))))).))))).....-------.((((..(((((((....)))))))..))))........ ( -30.90, z-score = -1.85, R) >consensus _UG_C_AAGGAGCGGGUUGCACGCAGUCAGAUUCGCUUGAUGCCCGAUUCCUGAUUC_______CCGAUUGUGAUCAUGACCAUGAUCAUGAUCGCCACAUGU .........(((((((((...........)))))))))...........................(((((((((((((....)))))))))))))........ (-17.36 = -18.56 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:32 2011