| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,979,528 – 14,979,630 |
| Length | 102 |
| Max. P | 0.631106 |
| Location | 14,979,528 – 14,979,630 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.03 |
| Shannon entropy | 0.23529 |
| G+C content | 0.41719 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -16.05 |
| Energy contribution | -15.93 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14979528 102 + 24543557 -UAUAUUAAAUGGGGUCUCCGUUGGGUAAUCUAACUAACUAAUCCGUAACUCUCUUCAGCUGCGGUUAGCCCCAUAAAUCUCCAUACACAAACGGCUGUAAAA -........((((((.....(((((.....)))))...((((.(((((.((......)).))))))))))))))).........((((........))))... ( -22.40, z-score = -1.77, R) >droSim1.chr3L 14296465 101 + 22553184 -UAUAUUAAAUGGGGUCUCCGUUCGGUAAUCUAACUAACUAAUCCGUAACUCUCUUCAGCUGCGGUUAGCCC-AUAAAUCUCCGUACACAAACGGCUAUAAAA -........(((((....((....))............((((.(((((.((......)).))))))))))))-))......((((......))))........ ( -19.60, z-score = -1.53, R) >droYak2.chr3L 15067939 97 + 24197627 -UAUAUUUAAUGGGGUCUUCAUUGGGUAAUC--ACUAGCUUAUCCGUAACUCUCUUCAGUUGCGGUUAGCUC-AUAAAUC--CGCAGACAUACGGCUGUAAAA -..((((((((((.....))))))))))...--...((((...((((((((......))))))))..)))).-.......--.((((........)))).... ( -23.10, z-score = -1.94, R) >droEre2.scaffold_4784 14935939 98 + 25762168 CAUUAUUGAAUGGGGCCUCCAUUGGGCAAUC--ACUGACUUAGCCGUAACUCUCUUCAGUUGCGGUUAGCUC-AUAAAUC--CCCAUACAUACGGCUGUAAAA ......((.(((((((((.....))))....--..(((.((((((((((((......)))))))))))).))-)......--))))).))............. ( -30.10, z-score = -2.95, R) >consensus _UAUAUUAAAUGGGGUCUCCAUUGGGUAAUC__ACUAACUAAUCCGUAACUCUCUUCAGCUGCGGUUAGCCC_AUAAAUC__CGCACACAAACGGCUGUAAAA ...(((..(((((.....)))))..)))...............((((((((......)))))))).(((((......................)))))..... (-16.05 = -15.93 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:31 2011