Locus 7464

Sequence ID dm3.chr3L
Location 14,971,480 – 14,971,534
Length 54
Max. P 0.690622
window10283

overview

Window 3

Location 14,971,480 – 14,971,534
Length 54
Sequences 4
Columns 54
Reading direction reverse
Mean pairwise identity 82.10
Shannon entropy 0.28441
G+C content 0.31647
Mean single sequence MFE -8.47
Consensus MFE -8.82
Energy contribution -7.08
Covariance contribution -1.75
Combinations/Pair 1.44
Mean z-score -0.36
Structure conservation index 1.04
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.43
SVM RNA-class probability 0.690622
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 14971480 54 - 24543557
UAACUGAGUGUUUCAAAUGUAAAUAGCUUUUUACAAAGAUGCAGCUCUAGAAAC
...((((((((.((...((((((......))))))..)).))).))).)).... ( -10.30, z-score =  -1.23, R)
>droEre2.scaffold_4784 14928289 53 - 25762168
UAACUGAGUUUCUCAAAUGUGGAUAAC-GUUCACGAAGACAAUGUUCUAGAAAC
.......((((((....(((((((...-))))))).(((......))))))))) (  -8.00, z-score =  -0.04, R)
>droSec1.super_0 7088002 54 - 21120651
UAACUGAGUGUUUCAAAUGUAGAUAGUUUUUUACAAAGAUGCUGCUUGAGAAAA
...((((((((.((...((((((......))))))..)).)).)))).)).... (  -7.80, z-score =  -0.08, R)
>droSim1.chr3L 14288456 54 - 22553184
UAACUGAGUGUUUCAAAUGUAGAUAGUUUUUUACAAAGAUGCUGCUUGAGAAAA
...((((((((.((...((((((......))))))..)).)).)))).)).... (  -7.80, z-score =  -0.08, R)
>consensus
UAACUGAGUGUUUCAAAUGUAGAUAGCUUUUUACAAAGAUGCUGCUCGAGAAAA
...((((((((.((...((((((......))))))..)).)).)))).)).... ( -8.82 =  -7.08 +  -1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:28 2011