| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,970,000 – 14,970,096 |
| Length | 96 |
| Max. P | 0.731715 |
| Location | 14,970,000 – 14,970,096 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.13 |
| Shannon entropy | 0.33896 |
| G+C content | 0.27675 |
| Mean single sequence MFE | -15.00 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14970000 96 - 24543557 AGAAAAUUAGUUUUUCCUUUGUUGAAAUAAAUCAGCUCUUCAUGGGAAGACUAAC-AAAAAAUCCAGCUUGUGUUCUUGAUUAGCCAAUUUUUAAAA ......(((((((((((...(((((......))))).......))))))))))).-.((((((...(((.((.......)).)))..)))))).... ( -17.30, z-score = -0.77, R) >droSim1.chr3L 14286945 82 - 22553184 AGAAAAUUAGUUUUUCCUUUGUUGAAAUAAACCAGCUCUUCAUGGGAAGACUAACAAAAAAAUCCAUCUUGUGUUCUUCAUU--------------- ......(((((((((((...((((........)))).......)))))))))))............................--------------- ( -13.70, z-score = -0.80, R) >droSec1.super_0 7086490 89 - 21120651 --AAAAUUAGUUUUUCCUUUGUUGAAAUAAAUCAGCUCUUCAUGGGAAGACUAACAAAAAAAUCCAUCUUGUGUUCUUUCUUA-----UUUUAAAA- --....(((((((((((...(((((......))))).......))))))))))).............................-----........- ( -15.10, z-score = -1.87, R) >droYak2.chr3L 15057820 97 - 24197627 AGAAAAUUAGUUUUUCCUUUGUUGAAAUAAAGCAGCUCUUCAUGGGAAGACUAACAAAAAAAACCAUAUUGUGUUCUUUAUUAGCCAAUUUUUUAAA .((((((((((((((((...((((........)))).......))))))))))).............((((.(((.......))))))))))))... ( -14.30, z-score = -0.02, R) >droEre2.scaffold_4784 14926637 94 - 25762168 AGAAAAUUAGUUUUUCCUUUGUUGAAAUAAACCAGCUCUUCAUGGGAAGACUAAC--AAAAAUCCAUAUUGUGUUCUUAAAUAGCCAUUUUUUUAA- ......(((((((((((...((((........)))).......))))))))))).--((((((...((((.........))))...))))))....- ( -14.30, z-score = -0.50, R) >droAna3.scaffold_13337 19143053 92 + 23293914 --AGAAAUAGUUUUUCCUUUGUUGAAAUAAAACAGCUCUUCAUGGGAAAGCUAACAAAAAAAACUUCAUUGUGUUUAUUUUCA---AAUUCUUAACA --.((((((((((((((...((((........)))).......)))))))))).......((((........))))..)))).---........... ( -15.30, z-score = -1.22, R) >consensus AGAAAAUUAGUUUUUCCUUUGUUGAAAUAAACCAGCUCUUCAUGGGAAGACUAACAAAAAAAUCCAUAUUGUGUUCUUUAUUA___AAUUUUUAAA_ ......(((((((((((...((((........)))).......)))))))))))........................................... (-13.61 = -13.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:28 2011