| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,967,377 – 14,967,473 |
| Length | 96 |
| Max. P | 0.821952 |
| Location | 14,967,377 – 14,967,473 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 69.58 |
| Shannon entropy | 0.50028 |
| G+C content | 0.31480 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -7.80 |
| Energy contribution | -9.30 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14967377 96 + 24543557 AUAGACAUCAUACUUCUUCAAAACAAAAUAUUUGUCUCUGAGGAUUUCAGCUCUUUUGUGGCCCUAAGUAAUAGAAAAAAUGAAACCUCAAGUAAA ..(((((.........................))))).(((((.(((((....((((((.((.....)).))))))....))))))))))...... ( -16.01, z-score = -0.94, R) >droSim1.chr3L 14284316 82 + 22553184 GUAGACAUCAAACUUCUUCAAAACAAAAUAC--------AAGGAAUUCAGUUCUUUU---UCUUU---UAAUAGAAGAAUUGAAACCUCAAGUAAA ............................(((--------.(((..((((((((((((---.....---....)))))))))))).)))...))).. ( -12.90, z-score = -1.46, R) >droYak2.chr3L 15055017 95 + 24197627 AUAGACAUCAUACAACUUCAAGGCAACAUAGUUGUCUCCCGGAAUUUCAGCUCUUUUGUGGUCAUUAGUAA-AAAAGAAUUGAAACCUCGAGUAAA ..........(((.......(((((((...)))))))..(((..((((((.((((((..............-)))))).))))))..))).))).. ( -16.74, z-score = -0.54, R) >droEre2.scaffold_4784 14924025 78 + 25762168 ----------AACAAGUUCAAUGCAAAAUAGUUGC--------AUUUCAGUUCUUUUGUGGCCCCAAGUAAUAAAAGAAUUGAAACCUCAAGUAAA ----------...........(((((.....))))--------)(((((((((((((((.((.....)).)))))))))))))))........... ( -18.90, z-score = -4.02, R) >consensus AUAGACAUCAAACAACUUCAAAACAAAAUAGUUGU_____AGGAUUUCAGCUCUUUUGUGGCCCUAAGUAAUAAAAGAAUUGAAACCUCAAGUAAA .............................................((((((((((((((...........))))))))))))))............ ( -7.80 = -9.30 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:27 2011