| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,963,141 – 14,963,241 |
| Length | 100 |
| Max. P | 0.850889 |
| Location | 14,963,141 – 14,963,241 |
|---|---|
| Length | 100 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 86.65 |
| Shannon entropy | 0.25370 |
| G+C content | 0.35284 |
| Mean single sequence MFE | -19.79 |
| Consensus MFE | -15.62 |
| Energy contribution | -15.34 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.850889 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14963141 100 + 24543557 UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCGCGUCCCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU---CACAAUCAAG-CGUUACUAUCGUUAACUCA ...........(((((((((((((((((....).)))))))))..........((((((.....)))))))---).))))).((-((.......))))...... ( -21.80, z-score = -2.31, R) >droSim1.chr3L 14280110 100 + 22553184 UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCGCGUCCCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU---CACAAUCAAG-CGUUACUAUCGUUAACUCA ...........(((((((((((((((((....).)))))))))..........((((((.....)))))))---).))))).((-((.......))))...... ( -21.80, z-score = -2.31, R) >droSec1.super_0 7079959 100 + 21120651 UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCGCGUCCCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU---CACAAUCAAG-CGUUACUAUCGUUAACUCA ...........(((((((((((((((((....).)))))))))..........((((((.....)))))))---).))))).((-((.......))))...... ( -21.80, z-score = -2.31, R) >droYak2.chr3L 15050975 100 + 24197627 UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCGCGUCUCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU---CACAAUCAAG-CGUUACUAUCGUUAACUCA ...........(((((((((((((((((....))).)))))))..........((((((.....)))))))---).))))).((-((.......))))...... ( -19.10, z-score = -1.89, R) >droEre2.scaffold_4784 14920428 100 + 25762168 UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCACGUCUCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU---CACAAUCAAG-CGUUACUAUCGUUAACUCA ...........(((((((((((((((((....))).)))))))..........((((((.....)))))))---).))))).((-((.......))))...... ( -19.10, z-score = -2.34, R) >droAna3.scaffold_13337 19137252 101 - 23293914 UAUUAGGCAUAGAUUGGAUUCUUUGGUCGCCAGCCCCAAAGGAAACGCAACUCUAAUUGAUAUUCAAUUGU---CACAAUCAUGACGUUACUACCGUAAACACA .....(.(((.(((((((((((((((..(....).))))))))..........((((((.....)))))))---).)))))))).).((((....))))..... ( -18.10, z-score = -0.35, R) >dp4.chrXR_group6 12543438 97 - 13314419 UAUUAGGUAUAGAUUGGAUUCUUUGGUUCC----UCCCAAGGAAAUGCAACUCUAAUUGAUAUUCAAUUAUUAUCACAAUCAAU-UGUAACUAU-AUAAAUAC- ...(((.(((((((((((((((((((....----..)))))))).........((((((.....))))))...)).)))))...-)))).))).-........- ( -18.30, z-score = -1.55, R) >droPer1.super_12 958364 97 - 2414086 UAUUAGGUAUAGAUUGGAUUCUUUGGUUCC----UCCCAAGGAAAUGCAACUCUAAUUGAUAUUCAAUUAUUAUCACAAUCAAU-UGUAACUAU-AUAAAUAC- ...(((.(((((((((((((((((((....----..)))))))).........((((((.....))))))...)).)))))...-)))).))).-........- ( -18.30, z-score = -1.55, R) >consensus UAUUAGGCAUAGAUUGGAUUCUUUGGGCUCGCGUCCCAAGGGAAACACAACUCUAAUUGAUAUUCAAUUAU___CACAAUCAAG_CGUUACUAUCGUUAACUCA ...........(((((..((((((((.........))))))))..........((((((.....))))))......)))))....................... (-15.62 = -15.34 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:24 2011