| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,959,599 – 14,959,692 |
| Length | 93 |
| Max. P | 0.517038 |
| Location | 14,959,599 – 14,959,692 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 74.48 |
| Shannon entropy | 0.49464 |
| G+C content | 0.41545 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -10.63 |
| Energy contribution | -10.60 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14959599 93 + 24543557 UGAAAAAGCAAUCAUCGCCGCGAAGA---UCGCUGAGAUCGGCUGAUGAUGUUUGCAGAUAAGAUUCUAGAAGAAACCCUUACUCUA---CAAAACCAU------ ..........((((((((((((....---.))).(....)))).)))))).((((.(((((((.(((.....)))...)))).))).---)))).....------ ( -19.70, z-score = -1.25, R) >droSim1.chr3L 14276441 93 + 22553184 UGAAAAAGCAAUCAUCGCCGCGAAGA---UCGCUGAGAUCGGCUGAUGAUGUUUGCAGAUAAGAUUGUAGAAAAAACCCUUACUCUA---CAAAACCAU------ ((...(((((.(((((((((((....---.))).(....)))).)))))))))).)).......(((((((............))))---)))......------ ( -22.70, z-score = -2.68, R) >droSec1.super_0 7076328 93 + 21120651 UGAAAAAGCAAUCAUCGCCGCGAAGA---UCGCUGAGAUCGGCUUAUGAUGCUUGCAGAUAAGAUUGUAGAAGAAACCCUUACUCUA---AAAAACCAU------ .......((((.(((((..((...((---((.....)))).))...))))).))))(((((((...............)))).))).---.........------ ( -16.66, z-score = -0.35, R) >droYak2.chr3L 15047272 96 + 24197627 UGAAAAAGCAAUCAUCGCCGCGAAGA---UCGCUGAGAUCGGCUGAUGAUGUUUGCAGAUAAGAUUCUGGAAGAAACCCUUACUCCACAAAAAAACCAU------ .....(((((.(((((((((((....---.))).(....)))).)))))))))).((((......))))..............................------ ( -20.40, z-score = -1.18, R) >droEre2.scaffold_4784 14916911 89 + 25762168 UGAAAAAGCAAUCAUCGCCGCGAAGA---UCGCUGAGAUCGGCUGAUGAUGUUUGCAGAUAAGAUUCUAGA----ACCCUUACUCUA---AAAAACCAU------ .......(((((((((((((((....---.))).(....)))).))))))...)))(((((((........----...)))).))).---.........------ ( -18.50, z-score = -1.16, R) >droAna3.scaffold_13337 19134102 100 - 23293914 UAAAAAUGCAAUCAUCAUCGUGAAGAAUAUCGCCGACAUCGGCUGAUGAUGUUUGCAGAUAAGAUUCGAGAA--AUUCUUUACUCCA---AAAAAUUGAACCCAA ......(((((.(((((((..((......))((((....)))).))))))).)))))..........(((.(--(....)).)))..---............... ( -23.40, z-score = -2.51, R) >droGri2.scaffold_15110 6085080 96 - 24565398 UCAAAGAGCGAUCGCCUCCAAGAUGGU--CUGAUGAUGUUGGCAGAUAA---CCGAAAACGAGACUCACCAGCAAAUGACUACGAAAGCGAACUAUUGUCG---- .....((.(((((((......(.((((--(......((((((..((...---.((....))....)).))))))...))))))....))))....))))).---- ( -14.60, z-score = 1.40, R) >consensus UGAAAAAGCAAUCAUCGCCGCGAAGA___UCGCUGAGAUCGGCUGAUGAUGUUUGCAGAUAAGAUUCUAGAAGAAACCCUUACUCUA___AAAAACCAU______ .......((((((((((((((((......)))).(....))).)))))))...)))................................................. (-10.63 = -10.60 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:23 2011