| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,955,731 – 14,955,851 |
| Length | 120 |
| Max. P | 0.887264 |
| Location | 14,955,731 – 14,955,851 |
|---|---|
| Length | 120 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.73 |
| Shannon entropy | 0.27454 |
| G+C content | 0.36910 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.89 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14955731 120 + 24543557 UUUACACCAGAAAGUCUCUCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAACGCCGCCCCCAAAAAUGAAAAAAAAAAAUACGUUAAAAAUUUUCUA ........(((((((.......(((((..(((.(((......))))))..)))))..((((.((..((...))..)).))))..............................))))))). ( -18.50, z-score = -1.23, R) >dp4.chrXR_group6 12537076 100 - 13314419 UUUACACCAAAAAGUCUCCCAUCAAUCUUUUAACAAUAUCGGUUGUAGAUGAUUGUUGGGUUGCACUCCCAAAACGCC----CCAGAAAAAA------------UGCCCAACAUUU---- .............((..((((.(((((.((((.((((....)))))))).))))).))))..))..............----.......(((------------((.....)))))---- ( -18.00, z-score = -1.20, R) >droAna3.scaffold_13337 19130648 107 - 23293914 UUUACACCAGAAAGUCUAACAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGUUGAACUCCCAAAACGCC--CCCCAAAAAUAAA-----------UGUUAAAAAUUUUCUA ........(((((((.(((((((((((..(((.(((......))))))..)))))(((((.......)))))......--............)-----------)))))...))))))). ( -20.70, z-score = -3.05, R) >droEre2.scaffold_4784 14913018 115 + 25762168 UUUACACCAGAAAGUCUCCCAUCAAUCUUCUGACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAAAUCCUCCCCCAAAAAUGGAAAAAAA-----CGUUAAAAAUUUUCUA ........(((((((..((((.(((((..(((.(((......))))))..))))).))))(((......)))...(((............)))......-----........))))))). ( -21.30, z-score = -1.77, R) >droYak2.chr3L 15043274 117 + 24197627 UUUACACCAGAAAGUCGCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUAGGGCUGUACUCCCAGAACGCCUCCCCCAAAAAUGGAAAAAAAU---ACGUUAAAAAUUUUCUA ........(((((((.((((..(((((..(((.(((......))))))..)))))..))))...........((((......(((....)))........---.))))....))))))). ( -22.56, z-score = -2.11, R) >droSec1.super_0 7072358 118 + 21120651 UUUACACCAGAAAGUCUCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAACGCCGCCCCCAAAAAUGAAAAAAAAA--UACGUUAAAAAUUUUCUA ........(((((((..((((.(((((..(((.(((......))))))..))))).))))(((......)))............................--..........))))))). ( -20.10, z-score = -1.97, R) >droSim1.chr3L 14272440 117 + 22553184 UUUACACCAGAAAGUCUCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUAUACUCCCAGAACGCCGCCCCCAAAAAUGAAAAAAAA---UACGUUAAAAAUUUUCUA ........(((((((..((((.(((((..(((.(((......))))))..))))).))))............((((.......................---..))))....))))))). ( -18.71, z-score = -1.84, R) >consensus UUUACACCAGAAAGUCUCCCAUCAAUCUUCUAACAAUAUCGUUUGUAGCUGAUUGUUGGGCUGUACUCCCAGAACGCCGCCCCCAAAAAUGAAAAAAAA____ACGUUAAAAAUUUUCUA ........(((((((..((((.(((((..(((.(((......))))))..))))).))))(((......)))........................................))))))). (-15.64 = -15.89 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:21 2011