| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,936,917 – 14,937,056 |
| Length | 139 |
| Max. P | 0.945934 |
| Location | 14,936,917 – 14,937,056 |
|---|---|
| Length | 139 |
| Sequences | 7 |
| Columns | 151 |
| Reading direction | reverse |
| Mean pairwise identity | 79.94 |
| Shannon entropy | 0.37980 |
| G+C content | 0.40110 |
| Mean single sequence MFE | -34.51 |
| Consensus MFE | -21.70 |
| Energy contribution | -21.58 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14936917 139 - 24543557 GAGAACACAAGACUGACUGACUUGUGUGCCUUGGAGGUGACAAAGU---UCGUCGCCUCCGCCAACUGUACAUAUCAAA----CUAGCUGCUAAAAUGUCUUCAAUUAUGCUUUAAUGUAGUCUAAG---UUAGU--AUUAUCAUUGUCUU ........(((((..((((((((((((((..((((((((((.....---..))))))))))......))))))).....----.(((((((......((.(......).))......)))).)))))---)))))--.........))))) ( -35.10, z-score = -1.74, R) >droSim1.chr3L 14254936 135 - 22553184 GAGAACACGA----GACUGACUUGUGUGCCUUGGAGGUGACAAACU---UCGUCACCUCCGCCAACUGUACAUAUCAAA----CUAGCUGCUAAAAUGUCUUCAAUAAUGCUUUAAUGUAGUCUAAG---UUAGU--AUUAUCAUUGUCUU ((((....((----.((((((((((((((..((((((((((.....---..))))))))))......))))))).....----.(((((((......((.((....)).))......)))).)))))---)))))--....))....)))) ( -35.80, z-score = -2.65, R) >droSec1.super_0 7055162 135 - 21120651 GAGAACACGA----GACUGACUUGUGUGCCUUGGAGGUGACAAACU---UCGUCACCUCCGCCAACUGUACAUAUCAAA----CUAGCUGCUAAAAUGUCUUCAAUAAUGCUUUAAUGUAGUCUAAG---UUAGU--AUUAUCAUUGUCUU ((((....((----.((((((((((((((..((((((((((.....---..))))))))))......))))))).....----.(((((((......((.((....)).))......)))).)))))---)))))--....))....)))) ( -35.80, z-score = -2.65, R) >droYak2.chr3L 15023332 135 - 24197627 GAGAACACGA----GACUGACUUGUGUGCCUUGGAGGUGACAAACU---GCGUCGCCUCCGCCAACUGUACAUAUCAAA----CUAGCUGCUAAAAUGUCUUCAAUAAUGCUUUAAUGUAGUCUAAG---UUAGU--AUAAUCAUUGUCUU ((((....((----.((((((((((((((..((((((((((.....---..))))))))))......))))))).....----.(((((((......((.((....)).))......)))).)))))---)))))--....))....)))) ( -35.40, z-score = -2.14, R) >droEre2.scaffold_4784 14897944 134 - 25762168 GAGAACACGA----GACUGACUUGUGUGCCUUGGAGGUGACAACCU---UCGUCGCCUCCGCC-UCUGUACAUAUCAAA----CUAGCUGCUAAAAUGUCUUCAAUCAUGCUUUAAUGUAGUCUAAG---UUAGU--GUAAUCAUUGUCUU ((..((((..----((((....(((((((..((((((((((.....---..))))))))))..-...))))))).....----.(((((((....(((........)))........)))).)))))---)).))--))..))........ ( -36.00, z-score = -2.29, R) >droAna3.scaffold_13337 19113675 151 + 23293914 GAGAACACGAGACUGACUCACUUUCGUGCCUCGGAAGCAACUCCUUCGCCCGUUGCUUCCGCCAACUGUACAUAUUCAACCACCUAGCUCUAAGAUUGUCUUCAAUAAUGCUUUAAUUUAGUCUAAGUUCUUAGUUAGUAAUCAUUGUCUU ((((((...(((((((.........((((..((((((((((..........))))))))))......))))..............(((......((((....))))...))).....)))))))..))))))................... ( -34.40, z-score = -2.34, R) >droPer1.super_12 928629 138 + 2414086 GAGAGCACAAGACUGACCUGCCUCUGUGCCUCGAAAGCACUAUCAA---ACGUCGCUUUCAC--AAUGUAC-UAUAUAG---UAUAUGUACAUAGAAAUCUUCAA--AUGCUUUAACUUUUCCUAGG-UAGUAGCU-AUAAUCAUUGUCUU (((.(((((((.(......).)).))))))))((((((((......---..)).))))))..--.((((((-((((...---)))).))))))(((.........--..(((...((((.....)))-)...))).-..........))). ( -29.05, z-score = -1.24, R) >consensus GAGAACACGA____GACUGACUUGUGUGCCUUGGAGGUGACAAACU___UCGUCGCCUCCGCCAACUGUACAUAUCAAA____CUAGCUGCUAAAAUGUCUUCAAUAAUGCUUUAAUGUAGUCUAAG___UUAGU__AUAAUCAUUGUCUU ..............(((.....(((((((..((((((((((..........))))))))))......)))))))..........(((((((..........................)))).))).....................))).. (-21.70 = -21.58 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:16 2011