| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,933,872 – 14,933,992 |
| Length | 120 |
| Max. P | 0.821901 |
| Location | 14,933,872 – 14,933,992 |
|---|---|
| Length | 120 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Shannon entropy | 0.37874 |
| G+C content | 0.59000 |
| Mean single sequence MFE | -49.39 |
| Consensus MFE | -29.66 |
| Energy contribution | -29.34 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14933872 120 + 24543557 GCACGGAGUUCGAGGCGCACAACAAGGGCAUCGGAUGCCUGAUCAUGCUGGGCGAGGGCACCCUUCUCUCCGGAGGCGAGAAAGAUCGCAAGAUCGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((.(((((((......((((((...)))))).....)))..(((..((....))(((((.((...)).))))).((((....))))))))))).))))))).)))...... ( -56.10, z-score = -2.99, R) >droSim1.chr3L 14251924 120 + 22553184 GCACGGAGUUCGAGGCGCACAACAAGGGCAUCGGAUGCCUGAUCAUGCUGGGCGAGGGCACCCUACUCUCCGGAGGCGAGAAGGAUCGCAAGAUCGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((.(((((((......((((((...)))))).....)))..(((.(((....))).(((.((...)).)))...((((....))))))))))).))))))).)))...... ( -55.10, z-score = -2.73, R) >droSec1.super_0 7052156 120 + 21120651 GCACGGAGUUCGAGGCGCACAACAAGGGUAUCGGAUGCCUGAUCAUGCUGGGCGAGGGCACCCUACUCUCCGGAGGCGAGAAGGAUCGCAAGAUCGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((.(((((((......((((((...)))))).....)))..(((.(((....))).(((.((...)).)))...((((....))))))))))).))))))).)))...... ( -53.10, z-score = -2.31, R) >droYak2.chr3L 15020380 120 + 24197627 GCACGGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUCAUCAUGCUGGGCGAGGGCACCCUGCUCUCCGGUGGCGAGAAGGAUCGCAAGAUCGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((...(((((((....(((((.....))))).....)).)))))((((((.....)))))).((((((((......((....))))))))))..))))))).)))...... ( -56.80, z-score = -2.20, R) >droEre2.scaffold_4784 14895119 120 + 25762168 GCACGGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUCAUUAUGCUGGGCGAGGGCACUCUGCUCUCCGGAGGCGAGAAGGAUCGCAAGAUCGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((.((((((.......))))..((((((((((.....((...))((((((.....))))))..)))))).....((((....)))))))).)).))))))).)))...... ( -58.30, z-score = -3.11, R) >droAna3.scaffold_13337 19110965 120 - 23293914 GCACGGAGUUCGAGGCCCACAACAAGGGCAUCGGGUGCCUGAUCAUGCUGGGCGAGGGCACCCUGCUAUCUGGCGGAGAGAAGGAUCGCAAGAUUGCAGCCUGGGACUCCCUGCAGAACU (((.(((((((.((((((.......))(((((((((((((..((.....))....))))))))(((.((((..(.....)..)))).))).)).))).)))).))))))).)))...... ( -53.80, z-score = -2.21, R) >dp4.chrXR_group6 12505182 120 - 13314419 GCACCGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUGAUCAUGCUGGGGGAGGGAACUCUGCUGUCGGGCGGCGAAAAGGACCGCAAGAUAGCCGCCUGGGACUCCCUGCAGAACU (((..((((((.(((((((((....(((((.....))))).....)).))).((((....))))((((((..(((((......).))))..)))))).)))).))))))..)))...... ( -52.80, z-score = -1.77, R) >droPer1.super_12 925747 120 - 2414086 GCACCGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUGAUCAUGCUCGGGGAGGGAACGCUGCUGUCGGGCGGCGAAAAGGACCGCAAGAUAGCCGCCUGGGACUCCCUGCAGAACU (((..((((((.((((((.......)))).....((.(((((......))))).)).....((.((((((..(((((......).))))..)))))).)))).))))))..)))...... ( -50.50, z-score = -1.05, R) >droWil1.scaffold_181136 1759394 120 - 2313701 GCACAGAAUUCGAGGCACACAAUAAAGGCAUCGGUUGUCUUAUUAUGCUAGGUGAGGGCACUCUGCUUUCAGGUGGUGAAAAGGAUCGGAAAAUAGCCGCAUGGGAUUCCUUACAGAACU .....((((((..(((........((((((.....)))))).....((((..(((((((.....)))))))..))))..................))).....))))))........... ( -26.60, z-score = 0.99, R) >droVir3.scaffold_13049 7441536 120 - 25233164 GCACCGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUGAUUAUGUUGGGCGAGGGCACUUUGCUGUCGGGUGGUGAAAAGGAUCGCAAAAUUGCUGCCUGGGACUCGCUGCAAAAUU (((.(((((((.((((...(((((.(((((.....))))).....)))))(((((.(((.....))).))..(((((.......)))))......))))))).))))))).)))...... ( -47.40, z-score = -1.79, R) >droMoj3.scaffold_6680 1895030 120 - 24764193 GCACCGAGUUUGAGGCCCACAAUAAGGGCAUCGGCUGCCUGAUUAUGCUGGGCGAGGGAACUUUGCUGUCAGGUGGCGAAAAGGAUCGCAAAAUUGCAGCUUGGGACUCGCUGCAAAAUU (((.(((((((((.((((.......)))).))(((((((((((.......(((((((...))))))))))))...((((......))))......))))))..))))))).)))...... ( -44.81, z-score = -1.75, R) >droGri2.scaffold_15110 6067553 120 - 24565398 GCACUGAGUUCGAGGCCCACAACAAAGGCAUCGGUUGCCUGAUUAUGCUGGGUGAGGGCACUCUCCUGUCUGGCGGUGAGAAGGAUCGCAAAGUUGCUGCCUGGGACUCACUGCAAAAUU (((.(((((((.((((...((((..(((((.....))))).....(((((((.(((....))).)))....))))((((......))))...))))..)))).))))))).)))...... ( -47.20, z-score = -1.91, R) >anoGam1.chrX 8845996 120 + 22145176 GCAUGGAGUUCGAGGCGCACAACAAGGCGAUCAGCUGUCUGGUGAUGCUGUCCGAGGGUACGCUGAUAUCGGGCGGCGAGAAGGACCGCAAGAUAGCGGCCUGGGACUCGCUGCAGAACU (((..((((((.((((((........)).....(((((((.(((.((((((((((.((....))....))))))))))........))).))))))).)))).))))))..)))...... ( -49.20, z-score = -1.70, R) >apiMel3.Group11 2237218 120 + 12576330 GCAUGGAAUUCGAGGCGCACAACAAAGGUAUCAGCUCCCUGGUCAUGUUGUCGGAGGGUACGUUGCUCUCCGGCGGUGAGAAGGACCGUAAGAUAGCAGCCUGGGAUUCCCUGCAGAAUU (((.(((((((.((((((((((((...(.(((((....)))))).))))))((((((((.....))))))))(((((.......)))))......)).)))).))))))).)))...... ( -51.60, z-score = -3.48, R) >triCas2.ChLG9 7924355 120 + 15222296 GUUUGGAGUACGAAGCCCACAACAAAGGGGUCAGUUCGCUGGUGAUGCUGUCGGAAGGAACGCUGCUUUCGGGUGGUGACAAAGAUCGGAAAAUUGUCGCCUGGGAUUCCCUCCAAAACU .(((((((...(((.(((((...((((.(((..((((.((..((((...))))..))))))))).))))...))((((((((...........)))))))).))).))).)))))))... ( -37.50, z-score = -0.13, R) >consensus GCACGGAGUUCGAGGCCCACAACAAGGGCAUCGGCUGCCUGAUCAUGCUGGGCGAGGGCACUCUGCUCUCCGGCGGCGAGAAGGAUCGCAAGAUAGCCGCCUGGGACUCCCUGCAGAACU (((.(((((((.((((.........(((((.....)))))......((.....((.((.......)).)).....(((........)))......)).)))).))))))).)))...... (-29.66 = -29.34 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:15 2011