| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,915,179 – 14,915,282 |
| Length | 103 |
| Max. P | 0.679616 |
| Location | 14,915,179 – 14,915,282 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.61 |
| Shannon entropy | 0.55611 |
| G+C content | 0.39411 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -7.05 |
| Energy contribution | -7.61 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.679616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14915179 103 - 24543557 ---UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC--AUAAAAGCCACAAGAACGGCCAGAAUAAUUCACAUUUU-GGCCA----UGCGAUGACAUCGCAUGCAUUUUUUCC--- ---(((((....(((((((((((.......))))))--)))))....)).)))..(((((((((.......)))))-))))(----((((((...)))))))...........--- ( -28.80, z-score = -3.74, R) >droEre2.scaffold_4784 14875218 102 - 25762168 ---UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC--AUAAAAGCCACA-GAACGGCCAGAAUAAUUCACAUUUU-GGCCA----UGCGUUGACAUCGCUUGCAUUUUUUCC--- ---(((((....(((((((((((.......))))))--)))))....)))-))..(((((((((.......)))))-))))(----((((.((....))..))))).......--- ( -28.80, z-score = -3.84, R) >droYak2.chr3L 15001119 103 - 24197627 ---UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC--AUAAAAGCCACAAGAACGGCCAGAAUAAUUCACAUUUU-GGCCA----UGCGAUGACAUCGCAUGCAUUUUUUCC--- ---(((((....(((((((((((.......))))))--)))))....)).)))..(((((((((.......)))))-))))(----((((((...)))))))...........--- ( -28.80, z-score = -3.74, R) >droSec1.super_0 7033534 103 - 21120651 ---UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC--ACAAAAGCCACAUGAACGGCCAGAAUAAUUCACAUUUU-GGCCA----UGCGAUGACAUCGCAUGCAUUUUUUCC--- ---...(((((((((.((((((..........))))--.)).))))....)))))(((((((((.......)))))-))))(----((((((...)))))))...........--- ( -27.10, z-score = -2.88, R) >droSim1.chr3L 14231668 103 - 22553184 ---UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC--AUAAAAGCCACAAGAACGGCCAGAAUAAUUCACAUUUU-GGCCA----UGCGAUGACAUCGCAUGCAUUUUUUCC--- ---(((((....(((((((((((.......))))))--)))))....)).)))..(((((((((.......)))))-))))(----((((((...)))))))...........--- ( -28.80, z-score = -3.74, R) >dp4.chrXR_group6 12488816 107 + 13314419 UUGCCGAGCGAGUUUAUGGGAAUUUGAAAUAUUUUC--AUAAAAGCCACACAACCGGCCAGAAUAAUUCACAUUUUCGGCCA----UGCGUUGACAUCGUUCAGAGACUCCCC--- .....((((((.((((((..(((.......)))..)--))))).......((((((((((((((.......))))).)))).----.).))))...))))))...........--- ( -25.60, z-score = -1.66, R) >droPer1.super_12 909193 107 + 2414086 UUGCCGAGCGAGUUUAUGGGAAUUUGAAAUAUUUUC--AUAAAAGCCACACAACCGGCCAGAAUAAUUCACAUUUUCGGCCA----UGCGUUGACAUCGUUCAGAGACUCCCC--- .....((((((.((((((..(((.......)))..)--))))).......((((((((((((((.......))))).)))).----.).))))...))))))...........--- ( -25.60, z-score = -1.66, R) >droAna3.scaffold_13337 19093525 103 + 23293914 -------UUCAGUUUAUGGGAAUUCGAAGUAUUUUC--AUAAAAGCCACACAAUCGGCCAAAAUAAUUCACAUUUUCGGCCA----UGCGUUGACAUUGCCCCUUUCUCCCUUUCC -------..........((((....(((.((((((.--......(((........))).)))))).)))........(((.(----((......))).)))......))))..... ( -16.90, z-score = -0.32, R) >droMoj3.scaffold_6680 1865900 93 + 24764193 ---UUUGUCGAGUUUCUACAGUGUUGCAAUAUUUUUUAAUAAAAGCGACGCAAUUGGCCAAAAUAUUUC-CAUUGUCGGCCUA---AACUAUGCCAGUGG---------------- ---.(((.(((((((.....(((((((..((((....))))...)))))))....((((..(((.....-.)))...)))).)---)))).)).)))...---------------- ( -18.60, z-score = -0.59, R) >droGri2.scaffold_15110 6052185 88 + 24565398 ---------CAGCUCAUAG-AAUUUGCAAUAUUUUU--GUAGAAGCAGCCCACUCGAGCUAAACAAUGCACAUUGUCGGCCAGAACUAUGAUGACAAUGG---------------- ---------.(((((....-..(((((((.....))--))))).(.((....))))))))..........((((((((..((......)).)))))))).---------------- ( -20.90, z-score = -1.47, R) >consensus ___UCUGUUCAGUUUAUGGAAAUUCGAAAUAUUUUC__AUAAAAGCCACACAAACGGCCAGAAUAAUUCACAUUUU_GGCCA____UGCGAUGACAUCGCAUGCAUUUUUUCC___ .................(((...................................(((((((((.......))))).))))......(((.......)))..........)))... ( -7.05 = -7.61 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:13 2011