| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,910,699 – 14,910,792 |
| Length | 93 |
| Max. P | 0.841396 |
| Location | 14,910,699 – 14,910,792 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 79.95 |
| Shannon entropy | 0.41210 |
| G+C content | 0.45919 |
| Mean single sequence MFE | -21.15 |
| Consensus MFE | -16.81 |
| Energy contribution | -16.95 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.841396 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14910699 93 - 24543557 UGUGC--UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUACGCCACACUAUGGCACCGAUCCCUUGCCAUCCUACUCCAC .((((--((((.((((...(((((((((.(((..........))).)))))))))...)))).))))))))........................ ( -22.30, z-score = -1.75, R) >droSim1.chr3L 14227016 93 - 22553184 UGUGC--UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGAUCCCUUGCCAUCCCACUCCAC .((((--((((.((((...(((((((((.(((..........))).)))))))))...)))).))))))))........................ ( -22.00, z-score = -1.08, R) >droSec1.super_0 7029057 93 - 21120651 UGUGC--UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGAUCCCUUGCCAUCCCACUCCAC .((((--((((.((((...(((((((((.(((..........))).)))))))))...)))).))))))))........................ ( -22.00, z-score = -1.08, R) >droYak2.chr3L 14996546 93 - 24197627 UGUGC--UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGAUCCUUUGCUACUCCGCUCCAC .((((--((((.((((...(((((((((.(((..........))).)))))))))...)))).)))))))).........((......))..... ( -22.60, z-score = -1.09, R) >droEre2.scaffold_4784 14870902 93 - 25762168 UGUGC--UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGAUCCCUCGCUGCCCCGCUCCCC ...((--.((((.(((...(((((((((.(((..........))).)))))))))))).))))...((((.(((....))).))))..))..... ( -23.60, z-score = -1.62, R) >droAna3.scaffold_13337 19089275 85 + 23293914 UGUGCUGUGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGCUUUCUCUUCCC---------- .(((((((((((.(((...(((((((((.(((..........))).)))))))))))).)))).)))))))..............---------- ( -22.90, z-score = -2.04, R) >droVir3.scaffold_13049 7421610 74 + 25233164 UGUAG-CUGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUCCGCAGUCUCU-------------------- .(..(-(((((.((((...(((((((((.(((..........))).)))))))))...))))...))))))..).-------------------- ( -18.70, z-score = -1.24, R) >droGri2.scaffold_15110 6048213 79 + 24565398 ----U-GUGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUACGUAUACUCGACGCCUCAA----------- ----.-((((((.(((...(((((((((.(((..........))).)))))))))))).)))).))..................----------- ( -15.10, z-score = 0.64, R) >consensus UGUGC__UGUGUUGUGAUUUAUUGCAUUCGUGUGCCAGAUUUUACAAAUGUAAUGCGCCACACUAUGGCACCGAUCCCUUGCCACCCC_CUCCAC .((((...((((.(((...(((((((((.(((..........))).)))))))))))).))))....))))........................ (-16.81 = -16.95 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:10 2011