| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,910,458 – 14,910,569 |
| Length | 111 |
| Max. P | 0.512061 |
| Location | 14,910,458 – 14,910,569 |
|---|---|
| Length | 111 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.21 |
| Shannon entropy | 0.33083 |
| G+C content | 0.41647 |
| Mean single sequence MFE | -25.69 |
| Consensus MFE | -15.61 |
| Energy contribution | -16.09 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.512061 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14910458 111 - 24543557 -----CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC-AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUC-- -----..................(((((((((.((.......(((((...((((((...(((((.((...-.....)).)))))))))))...)))))..)).)))).)))))....-- ( -28.00, z-score = -2.62, R) >droSim1.chr3L 14226776 111 - 22553184 -----CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC-AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUC-- -----..................(((((((((.((.......(((((...((((((...(((((.((...-.....)).)))))))))))...)))))..)).)))).)))))....-- ( -28.00, z-score = -2.62, R) >droSec1.super_0 7028817 111 - 21120651 -----CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC-AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUC-- -----..................(((((((((.((.......(((((...((((((...(((((.((...-.....)).)))))))))))...)))))..)).)))).)))))....-- ( -28.00, z-score = -2.62, R) >droYak2.chr3L 14996306 111 - 24197627 -----CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC-AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGCUUUC-- -----...................((((((((.((.......(((((...((((((...(((((.((...-.....)).)))))))))))...)))))..)).)))).)))).....-- ( -26.90, z-score = -2.15, R) >droEre2.scaffold_4784 14870649 111 - 25762168 -----CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC-AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGCUUUU-- -----...................((((((((.((.......(((((...((((((...(((((.((...-.....)).)))))))))))...)))))..)).)))).)))).....-- ( -26.90, z-score = -2.11, R) >droAna3.scaffold_13337 19089032 114 + 23293914 -----CUCGCAUAAAUAUUCCGUAUGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCGCUCUUUCAAAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUGCC -----...(((............(((((((((.((.......(((((...(((((((((.(((((........))))).)))..))))))...)))))..)).)))).)))))..))). ( -26.14, z-score = -1.32, R) >droPer1.super_12 904586 114 + 2414086 CUGUUCUCGCAUAAAUAUUCCGCACAGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCUACUCUC---AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUC-- ...........((((((((((((((((((......))))............((((((((.(((((...---..))))).)))..)))))))).))))).))))))............-- ( -25.60, z-score = -1.80, R) >droVir3.scaffold_13049 7421369 98 + 25233164 ----GCCCGCAUAAAUAUUCCACACGGAGUCAUAUUUCUUUU-UGCGUUUUGUGUACGUUUCAUUCU----AAAGUGGCGUGGACAUACGUGUCUGAAUUAUUUGAC------------ ----..............(((....)))((((...(((....-(((((..(((.(((((..(.....----...)..))))).))).)))))...))).....))))------------ ( -19.70, z-score = -0.12, R) >droMoj3.scaffold_6680 1862024 103 + 24764193 ----GCUUGCAUAAAUAUUCCGCAAGGAGUCAUAUUUCUUGC-AGCGUUUUGUGUAGGUCGU---------AAAGUGGCGUGGACAUACGUGUCUGAAUCAUUUGACUUCCGCUUUC-- ----(((.(((.(((((((((....)))...))))))..)))-))).....(((.((((((.---------..(((((..((((((....))))))..))))))))))).)))....-- ( -30.90, z-score = -2.36, R) >droGri2.scaffold_15110 6047964 108 + 24565398 ----GCUAACAUAAAUAUUCAACAUAAAGUCAUAUUUCUUUC-UGCGUUUUGUGUGCUUUUCAUUCGAG--AGAGCAUCGUGGACAUACGUGUCGGAAUUACUUUACUUCCGCUU---- ----....................((((((.....((((..(-.((((((..(((((((((.......)--)))))).))..))...)))))..))))..)))))).........---- ( -16.80, z-score = 0.78, R) >consensus _____CUCGCAUAAAUAUUCCGUACGGAGUCAUAUUUCUUUCUUUCGUUUUGUAUGCGCUCCACUCCUUC_AAAGUGGCGUGGACAUACGUGUCGGAAUUAUUUGACUUCCGUUUUC__ ..........................((((((...((((..(...(((..(((.(((((..((((........))))))))).))).))).)..)))).....)))))).......... (-15.61 = -16.09 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:09 2011