| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,880,429 – 14,880,532 |
| Length | 103 |
| Max. P | 0.741270 |
| Location | 14,880,429 – 14,880,532 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.61 |
| Shannon entropy | 0.45596 |
| G+C content | 0.47326 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -13.41 |
| Energy contribution | -13.75 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741270 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14880429 103 + 24543557 ------GGCCGGAUAUAAGCCGCCAAACAGAAAGGGCCGGGUUGAAAUGCUUAAGCACGAGUGGAGCUUACCGCAUUUUUACAACA--CACACA-GCAAUACAUACACACAG ------((((((.......))......(.....)))))..((.(((((((.(((((.(.....).)))))..))))))).))....--......-................. ( -19.40, z-score = 0.05, R) >dp4.chrXR_group6 12455675 93 - 13314419 ACACAGAGACACAUACAUAAUGCGGACCCACACGCACAGAGUUGAGAUGCUUAAGUACGAGUGGAGCUUAACGCAUUUUUGCAACA--CACACAG----------------- ....................((((........))))....((.(((((((((((((.(.....).)))))).))))))).))....--.......----------------- ( -18.40, z-score = -1.77, R) >droPer1.super_12 875198 93 - 2414086 ACACAGAGACACAUACAUAAUGCGGACCCACACGCACAGAGUUGAGAUGCUUAAGUACGAGUGGAGCUUAACGCAUUUUUGCAACA--CACACAG----------------- ....................((((........))))....((.(((((((((((((.(.....).)))))).))))))).))....--.......----------------- ( -18.40, z-score = -1.77, R) >droAna3.scaffold_13337 19059126 93 - 23293914 ------GGCCGGAUAUAAGCCGCCAUACAAAAAGGACAGGGUUGAAAUGCUUAAGUAUGAGUGGAGCUUUACGCAUUUUUACAUCGGCCGCACAUACAG------------- ------((((((.......((.((.........))...))((.(((((((..((((.........))))...))))))).)).))))))..........------------- ( -23.50, z-score = -1.18, R) >droSim1.chr3L 14196498 91 + 22553184 ------GGCCGGAUAUAAGCCGCCAAACAGAAAGGGCCGGGCUGAAAUGCUUAAGCACGAGUGGAGCUUAACGCAUUUUUACAACA--UAUACACACAG------------- ------....(..(((((((((((..........)))..))))(((((((((((((.(.....).)))))).))))))).......--))))..)....------------- ( -21.90, z-score = -1.24, R) >droSec1.super_0 6993223 91 + 21120651 ------GGCCGGAUAUAAGCCGCCAAACAGAAAGGGCCGGUCUGAAAUGCUUAAGCACGAGUGGAGCUUAACGCAUUUUUACAACA--CAUACACACAG------------- ------((((((.......))(((..........))).)))).(((((((((((((.(.....).)))))).))))))).......--...........------------- ( -21.30, z-score = -1.25, R) >consensus ______GGCCGGAUAUAAGCCGCCAAACAAAAAGGACAGGGUUGAAAUGCUUAAGCACGAGUGGAGCUUAACGCAUUUUUACAACA__CACACACACAG_____________ ......((.(((.......)))))................((.(((((((((((((.(.....).)))))).))))))).)).............................. (-13.41 = -13.75 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:06 2011