| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,851,679 – 14,851,749 |
| Length | 70 |
| Max. P | 0.524558 |
| Location | 14,851,679 – 14,851,749 |
|---|---|
| Length | 70 |
| Sequences | 10 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 83.86 |
| Shannon entropy | 0.34712 |
| G+C content | 0.50182 |
| Mean single sequence MFE | -18.61 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.20 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14851679 70 + 24543557 GUGGAAAUGACGGCAGCGGAAGUUAGCAGGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ........(((.(((((....))).))......((((((((...((......))...))))))))))).. ( -17.70, z-score = -0.68, R) >droAna3.scaffold_13337 19031739 70 - 23293914 GCAGCAGUGGCAGAAGCGGAAGCUAGCAAGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC (((((((..(((..(((....))).....((......))................)))..)))))))... ( -22.40, z-score = -1.45, R) >droEre2.scaffold_4784 14811619 70 + 25762168 GUGAAAAUGACGGCAGCGGAAGUUAGCAGGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ........(((.(((((....))).))......((((((((...((......))...))))))))))).. ( -17.70, z-score = -0.70, R) >droYak2.chr3L 14935585 70 + 24197627 GUGGAAAUGACGGCAGCGGAAGUUAGCAGGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ........(((.(((((....))).))......((((((((...((......))...))))))))))).. ( -17.70, z-score = -0.68, R) >droSec1.super_0 6964625 70 + 21120651 GUGGAAAUGACGGCAGCGGAAGUUAGCAGGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ........(((.(((((....))).))......((((((((...((......))...))))))))))).. ( -17.70, z-score = -0.68, R) >droSim1.chr3L 14166993 70 + 22553184 GUGGAAAUGACGGCAGCGGAAGUUAGCAGGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ........(((.(((((....))).))......((((((((...((......))...))))))))))).. ( -17.70, z-score = -0.68, R) >droVir3.scaffold_13049 7374875 67 - 25233164 GUAACAAUGGCAGCGGCGGAAGCUAGCAAGCAAAGCGGCGGAAAUGUAAAGUCAAUGCCGUUGAUGU--- ....(((((((((((((....))).)).........(((...........)))..))))))))....--- ( -21.80, z-score = -2.06, R) >droMoj3.scaffold_6680 1806938 68 - 24764193 --GCAACUGGAAGCGCCGGAAGUCGGCAAGCAAAGCGGCGGAAAUGUAAAGUCAAUGCCGUUGUUUCUGC --......((((((((((.....))))......(((((((....((......)).))))))))))))).. ( -21.40, z-score = -0.79, R) >dp4.chrXR_group6 12426874 60 - 13314419 ----------CAGCAGCGGAAGUUAGCAAGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUAGCUGUCGC ----------..(((((....))).)).......(((((((.(((((.......)))))....))))))) ( -16.00, z-score = -1.43, R) >droPer1.super_12 845634 60 - 2414086 ----------CAGCAGCGGAAGUUAGCAAGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUAGCUGUCGC ----------..(((((....))).)).......(((((((.(((((.......)))))....))))))) ( -16.00, z-score = -1.43, R) >consensus GUGGAAAUGACAGCAGCGGAAGUUAGCAAGCAAAGCGGCGGAAAUGUAAAAUCAAUGUUGUUGCUGUCGC ............(((((....))).))..((..((((((((...((......))...))))))))...)) (-14.29 = -14.20 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:02 2011