| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,850,404 – 14,850,507 |
| Length | 103 |
| Max. P | 0.877988 |
| Location | 14,850,404 – 14,850,507 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 64.68 |
| Shannon entropy | 0.73266 |
| G+C content | 0.46030 |
| Mean single sequence MFE | -27.45 |
| Consensus MFE | -9.17 |
| Energy contribution | -10.06 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14850404 103 + 24543557 CAUUUUCUGAGCUUACUGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCAGUUAACCCAA-----ACACCCGUCACAACCACACA--UACAUAUGUGUGUUC---- ..((..((((((((((((.....((((((........))))-)).))))))))...))))..)).....-----..............((((((--(....)))))))...---- ( -26.70, z-score = -1.99, R) >droPer1.super_12 844650 110 - 2414086 CAUUUUUCGAGCUUACCGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCAGUUAACACUACGCACGCACACACAGCCCCAACUUGACUGUACUUAUAUGUUU---- ..........((((((((.....((((((........))))-)).))))))))....(((((((......((...........))......))))))).............---- ( -25.30, z-score = -1.29, R) >dp4.chrXR_group6 12425867 110 - 13314419 CAUUUUUCGAGCUUACCGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCAGUUAACACUACGCACGCACACACAGCCCCAACUUGACUGUACUUAUAUGUUU---- ..........((((((((.....((((((........))))-)).))))))))....(((((((......((...........))......))))))).............---- ( -25.30, z-score = -1.29, R) >droAna3.scaffold_13337 19030888 81 - 23293914 ---------AGCUUACCGUCUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUUAGUUAUCCCAA-----ACACUCG-----CCCACAUA--UGCGUUU------------ ---------.((((((((.....((((((........))))-)).))))))))......(((......)-----))...((-----(.......--.)))...------------ ( -21.90, z-score = -2.30, R) >droEre2.scaffold_4784 14810430 99 + 25762168 CAUUUUCUGAGCUUACCGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCCGUUAACCCAA-----ACACCCGUCGCACCCACACA--UA----UGUGUGUUC---- ..........((((((((.....((((((........))))-)).))))))))......(((......)-----))............(((((.--..----.)))))...---- ( -26.00, z-score = -2.32, R) >droYak2.chr3L 14934150 107 + 24197627 CAUUUUCUGAGCUUACCGACUUAGCCAACUUGUAGCUGUUG-CCCUGGUAAGCACUUCAGUUAACCCAA-----ACACCCGUCACACCCACACA--UAUGUACAUAUGUGUGCUC ..((..((((((((((((.....((.(((........))))-)..))))))))...))))..)).....-----..............((((((--(((....)))))))))... ( -25.70, z-score = -2.20, R) >droSec1.super_0 6963413 103 + 21120651 CAUUUUCUGAGCUUACUGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCAGUUAACCCAA-----ACACCCGUCACACCCACACA--UACAUAUGUGUGUUC---- ..((..((((((((((((.....((((((........))))-)).))))))))...))))..)).....-----..............((((((--(....)))))))...---- ( -26.70, z-score = -2.03, R) >droSim1.chr3L 14165745 103 + 22553184 CAUUUUCUGAGCUUACUGACUUAGCCAACUUGUAGCUGUUG-GCCUGGUAAGCACUUCAGUUAACCCAA-----ACACCCGUCACACCCACACA--UACAUAUGUGUGUUC---- ..((..((((((((((((.....((((((........))))-)).))))))))...))))..)).....-----..............((((((--(....)))))))...---- ( -26.70, z-score = -2.03, R) >droVir3.scaffold_13049 7374526 109 - 25233164 -CACUUUUGAGCUGACUGGCUU--UUAAGUUGUUGCCAUUACGAACUGCAUGCAGUUAACGCACAUGCACAUGUGUG-UGCAUGUACAUGUACACAUGUCUACAUGUGUGUGC-- -.((((..(((((....)))))--..)))).............(((((....))))).(((((((((...(((((((-(((((....))))))))))))...)))))))))..-- ( -39.60, z-score = -1.58, R) >droMoj3.scaffold_6680 1806664 108 - 24764193 -CACUUUUGAGUUGACUGGCUU--UUAAGUUGUUGCCACUGCGCG-UAC-UGCAGUUAACACAUGACUCCACACACGCUGUAAGUGUGUGUUUAUCAGGACGUAAGUGUGUGC-- -.((((..(((((....)))))--..)))).......((((((..-...-))))))..((((((.(((((((((((((.....))))))))......))).))..))))))..-- ( -30.60, z-score = 0.40, R) >consensus CAUUUUCUGAGCUUACCGACUUAGCCAACUUGUAGCUGUUG_GCCUGGUAAGCACUUCAGUUAACCCAA_____ACACCCGUCGCACCCACACA__UACAUAUAUGUGUUU____ ..........((((((((.....((((((........)))).)).)))))))).............................................................. ( -9.17 = -10.06 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:01 2011