| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,835,835 – 14,835,930 |
| Length | 95 |
| Max. P | 0.657871 |
| Location | 14,835,835 – 14,835,930 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.36 |
| Shannon entropy | 0.46401 |
| G+C content | 0.39137 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -17.79 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.657871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14835835 95 + 24543557 UAAACUGAAAACAAAAAGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUUCC-AGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGUGGAAA--------------------- .............................((((((((.(((((.....(((((((.((-......)).....)))))))....)))))))))))))--------------------- ( -25.20, z-score = -2.17, R) >droYak2.chr3L 14919732 99 + 24197627 AAAACUGAAAACAAAAAGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUUCCCGGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGUGGAAGGGG------------------ .............................((((((((.(((((.....(((((((..(((....))).....)))))))....)))))))))))))...------------------ ( -25.40, z-score = -0.85, R) >droSec1.super_0 6949328 95 + 21120651 UAAACUGAAAACAAAAAGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUUCC-AGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGUGGAAU--------------------- ..............................(((((((.(((((.....(((((((.((-......)).....)))))))....)))))))))))).--------------------- ( -24.80, z-score = -2.19, R) >droWil1.scaffold_181136 1381078 80 - 2313701 ----------UUCCCAACAUAAUAGAAAUUUUUCA-GUACCGCUUUUUAACUUUUUAC-ACAGUUGGCAAUUGAAAAUU----GGGGAAGAGAGAG--------------------- ----------(((((((............((((((-((...(((....((((......-..))))))).))))))))))----)))))........--------------------- ( -13.00, z-score = -0.58, R) >droPer1.super_12 829482 110 - 2414086 ------AAAAAAUAAAGGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUCCC-CGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGCGGCAAGGGGCUGUGGAUAGAGCCAGU ------.......................((((((((.(((((.....(((((((..(-(.....)).....)))))))....)))))))))).))).((((........))))... ( -28.10, z-score = 0.54, R) >dp4.chrXR_group6 12409511 110 - 13314419 ------AAAAAAUAAAGGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUCCC-CGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGCGGCAAGGGGCUGUGGAUAGAGCCAGU ------.......................((((((((.(((((.....(((((((..(-(.....)).....)))))))....)))))))))).))).((((........))))... ( -28.10, z-score = 0.54, R) >consensus ______GAAAACAAAAAGAAAAUAGAAAAUUUCCGCGUGCCGCUUUUUAACUUUUUCC_AGAGUUGGCAAUUGAAAGUUUCUUGCGGCUGUGGAAA_____________________ .............................((((((((.(((((.....(((((((.................)))))))....)))))))))))))..................... (-17.79 = -18.60 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:27:00 2011