| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,834,959 – 14,835,056 |
| Length | 97 |
| Max. P | 0.865738 |
| Location | 14,834,959 – 14,835,056 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Shannon entropy | 0.27783 |
| G+C content | 0.49629 |
| Mean single sequence MFE | -31.83 |
| Consensus MFE | -18.99 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14834959 97 + 24543557 CACAUAAUUC--CCGCAAACUGGGAA--UGCUACGUCCGCUGCAA-GUUGCAACAAAAUUGCAGCAGCAGC---CAUGUUCUAAGCCGGUUAACGGUCGCACCCA ......((((--(((.....))))))--)((.((((..(((((..-(((((((.....))))))).)))))---.)))).....((((.....)))).))..... ( -30.60, z-score = -1.87, R) >droSim1.chr3L 14150477 102 + 22553184 CACAUAAUACGGCCGUAAACUGGGAA--UGCUACGUCCGCUGCAA-GUUGCAACAAAAUUGCAGCAGCAGCAGCUAUGUUCUAAGCCGGUUAACGGUCCCACCCA ..........((((((.((((((((.--.......)))(((((..-(((((((.....))))))).))))).(((........)))))))).))))))....... ( -34.70, z-score = -2.32, R) >droSec1.super_0 6948460 101 + 21120651 CACAUAAUACGGCCGUAAACUGGGAA--UGCUACGUCUGCUGGAA-GUUGCAACAAAAUUGCAGCAGCAGCU-CCAUGUUCUAAGCCGGUUAACGGUCCCACCCA ..........((((((.((((((...--....((((..((((...-(((((((.....)))))))..)))).-..))))......)))))).))))))....... ( -32.02, z-score = -1.73, R) >droYak2.chr3L 14918743 99 + 24197627 CACAUAAUAUGGCCGUAAACUGGGAG--UGCUGCGUCCGCUGCAA-GUUGCAACAAAAUUGCAGCAGCAGC---CAUGUUCUAAGCCGGUUAACGGUCGCACCCA ..........((((((.((((((...--((..((((..(((((..-(((((((.....))))))).)))))---.))))..))..)))))).))))))....... ( -36.00, z-score = -1.89, R) >droEre2.scaffold_4784 14794357 99 + 25762168 CACAUAAUACGGCCGUAAACUGGGAA--UGCUACGUCCGCUGCAA-GUUGCAACAAAAUUGCAGUAGCAGC---CAUAUUCUAAGCCGGUUAACGGUCGCACCCA .........(((((((.((((((((.--.......)))(((((..-.((((((.....))))))..)))))---............))))).)))))))...... ( -31.90, z-score = -2.13, R) >droAna3.scaffold_13337 19016948 95 - 23293914 CACAUAAUACGGCCGUAAACUGAAAUGCUACUGCGUCCGUUGCAA-GUUGCAACAAAAUUGCAGU---------CAUGUUCUAAGCCGGUUUACGGUCUCACCCG ..........((((((((((((....(((((((((...(((((..-...))))).....))))))---------.........)))))))))))))))....... ( -31.00, z-score = -3.64, R) >dp4.chrXR_group6 12408344 93 - 13314419 CAUAUAAUACGGCCGUAAACUGAAA---UGCUACGGCCGCCGGAACGUUGCAACAAAAUUGCAAC---------CAUGUUCUAAGCCGUUUUACGGUCACACCCA ..........(((((((((......---....(((((....((((((((((((.....)))))))---------...)))))..))))))))))))))....... ( -29.20, z-score = -3.08, R) >droPer1.super_12 828645 93 - 2414086 CAUAUAAUACGGCCGUAAACUGAAA---UGCUACGGCCGCCGGAACGUUGCAACAAAAUUGCAAC---------CAUGUUCUAAGCCGUUUUACGGUCACACCCA ..........(((((((((......---....(((((....((((((((((((.....)))))))---------...)))))..))))))))))))))....... ( -29.20, z-score = -3.08, R) >consensus CACAUAAUACGGCCGUAAACUGGGAA__UGCUACGUCCGCUGCAA_GUUGCAACAAAAUUGCAGCAGCAGC___CAUGUUCUAAGCCGGUUAACGGUCGCACCCA ..........((((((.(((((.......((.......))......(((((((.....))))))).....................))))).))))))....... (-18.99 = -19.03 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:59 2011