| Sequence ID | dm3.chr3L |
|---|---|
| Location | 14,833,760 – 14,833,858 |
| Length | 98 |
| Max. P | 0.951668 |
| Location | 14,833,760 – 14,833,858 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Shannon entropy | 0.43943 |
| G+C content | 0.39813 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -15.71 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 14833760 98 + 24543557 AAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAAAAACUCGGAA-------------- ..........((((....((((..(((((....(((((.((....)).)))))..)))))..))))..)))).((((...............))))..-------------- ( -24.56, z-score = -1.33, R) >dp4.chrXR_group6 12407435 99 - 13314419 AAAUAAAAAAUGCAAAAUCGU--GGGUCGUCUGAGGGUGAUGAACG-GGCGUGUGGGGGGAGGGUAAAUGCAACUAAAAUAAUCAACAAAAAAAGAAGGAAA---------- ...........(((...((((--..(((..(....)..)))..)))-)...)))..(..((..((.............))..))..)...............---------- ( -11.52, z-score = 0.03, R) >droAna3.scaffold_13337 19016115 108 - 23293914 AAAUAAAAAAUGCAAAAUCGUUAGGGCCGGCUAAGGGUGACGA--G-GGUG-ACUUGGUCAGGGCGUUUGCAACUAAAAUAAUCAAAAAAAAAAAAACUAAGAGAAAGGGGA ..........((((((..((((..((((.......(....).(--(-(...-.)))))))..))))))))))........................................ ( -21.10, z-score = -1.75, R) >droEre2.scaffold_4784 14793199 107 + 25762168 AAAUAAAAAAUGCAAAAUCGUUUGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGUUGAAAUAAUCAAAAAAACAAAAAAC--CUGGGUAA--- ..........((((....(((((.(((((....(((((.((....)).)))))..))))).)))))..)))).((((.....)))).............--........--- ( -28.10, z-score = -2.32, R) >droYak2.chr3L 14917524 107 + 24197627 AAAUAAAAAAUGCAAAAUCGUUUGGGCCUUCUAAGGGUGAUGAGGGUGACUCUCUUGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAAAAAAAAAAAAAA-CUGGGAA---- ..........((((....(((((.((((.....(((((.((....)).)))))...)))).)))))..))))............................-.......---- ( -24.80, z-score = -1.87, R) >droSec1.super_0 6947282 105 + 21120651 AAAUAAAAAAAGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAACGUGUGCAACUGAAAUAAUCAAAAAAAAAAAAAA---CUGGCAA---- ...........(((....((((..(((((....(((((.((....)).)))))..)))))..))))..)))...........................---.......---- ( -23.00, z-score = -1.78, R) >droSim1.chr3L 14149287 108 + 22553184 AAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUUUCGGCCGAAACGUGUGCAGUUGAAAUAAUCAAAAAAAAAAAAAAAAACUGGGAA---- ..........((((....((((..(((((...((((((.((....)).)))))).)))))..))))..)))).((((.....))))......................---- ( -26.30, z-score = -2.91, R) >consensus AAAUAAAAAAUGCAAAAUCGUUAGGGCCGUCUAAGGGUGAUGAGGGUGACUCUCUCGGCCGAAGCGUGUGCAGCUGAAAUAAUCAAAAAAAAAAAAAA_A_CUGGGAA____ ..........((((....((((..(((((((.......)))(((((.....)))))))))..))))..))))........................................ (-15.71 = -15.94 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:26:58 2011